PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487961.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 17184.7 Da PI: 6.4784 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.3 | 1.5e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasn++k++++lp ++r da++slvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la XP_016487961.1 7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMIQELPVQQRADAVNSLVYEANARMRDPVYGCVGAISYLQNQVSQLEMQLA 101 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_016487961.1 102 MAQTE 106 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.031 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-44 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MGGGTSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNISK MIQELPVQQR 60 ADAVNSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLEMQL AMAQTEILCI QMQQESAPNL 120 PAIQMEQYDG STPQALSFGS PNYLVAEQEF RRCGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-47 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-47 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-46 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-46 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784491.1 | 1e-113 | PREDICTED: LOB domain-containing protein 12 | ||||
Refseq | XP_016487961.1 | 1e-113 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 4e-74 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1S4BGH1 | 1e-111 | A0A1S4BGH1_TOBAC; LOB domain-containing protein 12-like | ||||
TrEMBL | A0A1U7X486 | 1e-111 | A0A1U7X486_NICSY; LOB domain-containing protein 12 | ||||
STRING | XP_009784491.1 | 1e-112 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-76 | LBD family protein |
Publications ? help Back to Top | |||
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