PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016487947.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 695aa MW: 80508.3 Da PI: 7.9586

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016487947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.7	3.4e-22	84	167	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH l XP_016487947.1 84 NYYNCYAREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRVLEVTLEHNHLL 167 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-19	84	167	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-26	286	379	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.829	573	609	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	584	611	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.7E-4	585	605	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MEEASLDSEL DLTGQGSGRL QEIESDGLDD QNSEQIESDE LFSQNGGQIE SDGLDDQNGF 60 TDGQKQFVAP AVGMEFESYD DAYNYYNCYA REVGFRVRVK NSWFKRNSRE KYGAVLCCSS 120 QGFKRIKDVN RLRKETRTGC PAMMRMRMVD SKRWRVLEVT LEHNHLLGAK AYQSIKKTGA 180 GNKKKLDSNC DAEVRTIKLY RALVIDAGAN RNANFSARRC KTSSDCHEKL NLRKGDTQAM 240 YNYFCRMQLT NPNFFYLMDL NDEGQLRNVF WVDARSRAAY AYFIDVIYFD NSYLSNKYEI 300 PLVAFVGTNH HGQSVLLGCG LLAGETQASY VWVFKAWLTC SLGRFPQTII TERCKILESA 360 ISEVFPRSSH RVALSHIMRK VPEKLGGLRN YDAIRKALIK TIYEALKPFD FEASWRFMIQ 420 RFGVGDHQWL LSLYDDRAKW APVYLKDTFF AGMATARSNE TLTAFFDKYL HKQTPLKEFL 480 DKYELALQKK YKEEAVADTE SRNSNTELKT RCSFELQLSK VYTREIFKRF QLEVEEMYSC 540 FSTTQLHVDG QMVIFLVKER VLGEGNRREI RDYEVLYNRG AAEVRCICSC FNFYGYLCRH 600 ALCVLNFNGV EEIPSKYILS RWKRDYKRLR ASDLESSSTE STEHVQWFSQ LYRSALQVVE 660 EGVISLDHYK VALNAFEESL TRVHHIEEKL NKNSL

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MEEASLDSEL DLTGQGSGRL QEIESDGLDD QNSEQIESDE LFSQNGGQIE SDGLDDQNGF  60
TDGQKQFVAP AVGMEFESYD DAYNYYNCYA REVGFRVRVK NSWFKRNSRE KYGAVLCCSS  120
QGFKRIKDVN RLRKETRTGC PAMMRMRMVD SKRWRVLEVT LEHNHLLGAK AYQSIKKTGA  180
GNKKKLDSNC DAEVRTIKLY RALVIDAGAN RNANFSARRC KTSSDCHEKL NLRKGDTQAM  240
YNYFCRMQLT NPNFFYLMDL NDEGQLRNVF WVDARSRAAY AYFIDVIYFD NSYLSNKYEI  300
PLVAFVGTNH HGQSVLLGCG LLAGETQASY VWVFKAWLTC SLGRFPQTII TERCKILESA  360
ISEVFPRSSH RVALSHIMRK VPEKLGGLRN YDAIRKALIK TIYEALKPFD FEASWRFMIQ  420
RFGVGDHQWL LSLYDDRAKW APVYLKDTFF AGMATARSNE TLTAFFDKYL HKQTPLKEFL  480
DKYELALQKK YKEEAVADTE SRNSNTELKT RCSFELQLSK VYTREIFKRF QLEVEEMYSC  540
FSTTQLHVDG QMVIFLVKER VLGEGNRREI RDYEVLYNRG AAEVRCICSC FNFYGYLCRH  600
ALCVLNFNGV EEIPSKYILS RWKRDYKRLR ASDLESSSTE STEHVQWFSQ LYRSALQVVE  660
EGVISLDHYK VALNAFEESL TRVHHIEEKL NKNSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016487947.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S4BGG4	0.0	A0A1S4BGG4_TOBAC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_009766776.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]