PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487807.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 856aa MW: 96935.8 Da PI: 6.7888 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.4 | 3.6e-16 | 65 | 140 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+++YA++vGFs+ + + ++ k +g i++ ++ Cs+e r+++ ++ C+a+l++++++++ w vtk++++HnH+++ XP_016487807.1 65 NFFDAYARHVGFSIHVGQYSRAKPDGPIISWDYSCSREVVRRKNIES--------------CNAMLRIERKNSDSWIVTKFVEDHNHSIV 140 69***************************************998877..............**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-13 | 65 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.9E-30 | 275 | 367 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.115 | 552 | 588 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.6E-10 | 552 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.2E-8 | 563 | 590 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MNIEVIDVEG QKRQKTGEIA AELNHNFKQG LPENFTERDA IVEFDDGEEK PYVGMEFQTE 60 EAAKNFFDAY ARHVGFSIHV GQYSRAKPDG PIISWDYSCS REVVRRKNIE SCNAMLRIER 120 KNSDSWIVTK FVEDHNHSIV NPSKVHYLRP CKHFAGASKT VGETPGAPTV VMVPVDGNHV 180 SVSSNEGVKD ASPVESNRVT KNFSPVIPIM FIQPCSRKRT LGRDAHNLLD YFKKMQAENP 240 GFYYAIQLDD ENRMTNAFWA DARSRIAYSH FGDAVIFDTM YRPNQFQVPF APFTGVNHHG 300 QIVLFGCALL LDESESSFTW LFRTWLSAMN NRPPVSITTD QDRAIKAAVN QVLPGTRHCI 360 CKWHILREGQ ERLAHIYMAH PSFYGKLYSC INYSETIEDF ELSWASILDR YGLRKNEWLQ 420 AVYNARNQWA PVYFRDTFFA ALPSNQGVTS FFDGYVNQQT TLPMFFKQYE RALESSLERE 480 IQSDFDTNCT TPMLKTPSPM EQQASNLYTK KVFAKFQEEL VETFAYTANK IDGDERLSKF 540 RVAKYEQDDK AYIVMLNLAE MKASCSCHMF EYSGILCRHI LTVFTVTNVL TVPSHYILRR 600 WTRNAKVGQG SEEDIVKQGI NSLSSRFNHL CLEALRYAEE GAVSVETYDA AISALRDGLS 660 KISIVAKNII RPPSSQGSGS TQDESIKRTL ATSDTAPSLW PWQDTMPRHF NLNDVGLPAG 720 DLNQPTMTPV AINRDGGLAD NVVVYTCFKS MTWVIENTTP ASKVAVINLK LQDYGKSPAG 780 ETEVQFRVTR VTLEPMLKSM GYISQQLSLP ANRVAVINLK LQDTKTPSGE TEVKFQVSTD 840 TLGSMLRSMA YIREQL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487806.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_016487807.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_016487808.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_016487809.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_016487810.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_016487811.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A1S4BG32 | 0.0 | A0A1S4BG32_TOBAC; protein FAR1-RELATED SEQUENCE 3-like | ||||
STRING | XP_009616992.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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