 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016487519.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
LBD |
| Protein Properties |
Length: 211aa MW: 23038.1 Da PI: 7.1466 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016487519.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 136 | 1.3e-42 | 45 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la
XP_016487519.1 45 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQAQLA 139
7********************************************************************************************** PP
DUF260 96 llkee 100
++++e
XP_016487519.1 140 KAQAE 144
99976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 211 aa
Download sequence Send
to blast |
MVYSSDTKAT VISTSPSSSR SVSPPSSSSS SPNSPPPPPM VVVSPCAACK ILRRRCAEKC 60
VLAPYFPPND PIKFTTAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN ARLRDPVYGC 120
AGAICQLQKQ VNELQAQLAK AQAEVVNMQC QQANLMALIC MDMNQSSPQA SPQQQSNLES 180
FTNNIPHSFQ NSMSFLDDNN NFGSVWEPMW T
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975445 | 8e-52 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
| GenBank | HG975518 | 8e-52 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
