PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487504.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 590aa    MW: 67110.5 Da    PI: 5.1247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.2e-2364164198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt+sd  ++  l++ +k a+++       ++k   +++l+++d++g++W++k+ ++++++r++lt+GW  Fv +++L +gD vvF   +++
  XP_016487504.1  64 FCKALTTSDIKSNWGLSVHRKDANKCfppldmaQEK--PTQELIVNDLQGNEWRFKHVFQGQPRRHLLTNGWGAFVTSKKLLAGDLVVFL--RDE 154
                     99****************************964433..4459************************************************..569 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     +++l+v+++r
  XP_016487504.1 155 TGKLHVGIRR 164
                     999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-3557176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2759166IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-1963164No hitNo description
PfamPF023625.9E-2064164IPR003340B3 DNA binding domain
SMARTSM010191.9E-1664166IPR003340B3 DNA binding domain
PROSITE profilePS5086312.5964166IPR003340B3 DNA binding domain
PfamPF065072.9E-5189250IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MNGLCLKRRS VEPLVYSNCF YMQVEHDTEE VYAETILLPN QEQNEPSTPE FCPLEPPRPQ  60
YQSFCKALTT SDIKSNWGLS VHRKDANKCF PPLDMAQEKP TQELIVNDLQ GNEWRFKHVF  120
QGQPRRHLLT NGWGAFVTSK KLLAGDLVVF LRDETGKLHV GIRRLSYQCN SVGSSTFSRQ  180
SMEGVLAVAS HAFATRSLFS VYYKPCHNRS SQFIMSLSNY FEGGNHGPGV GTISRTQQSS  240
LDSHVKRTSG MDQMSFPQGQ HMTNLLLEED QYMQDSEAIS ISARPTMMPL EIEQQSVESL  300
NNIHHIEDNV LQPHTAVARE NNEGFIPNET VAIQAQDENF DELFKETDFP DFVNTSLDTI  360
TLDWDSDLRS TIQDFDEWLE EQEETNPPGL QTCSEDHSRQ TSSILEQPTS SQVMSISSTP  420
SRIPYKGPGR GDEQVPWGRY QVARRCLPIL NRVVSRYPDS LVNFKVASSI FQSLHLEILA  480
ELVYFLDNLT VMNLSKDQFN VAGQHLWDLK LSGIELGWLE KRLAHIDGAF SMENLLQRRQ  540
AVTLRMGETL ATFRQLDEEL GRINKELHEL SLKVGPNPPM RFHPVLEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-622325083310Auxin response factor 1
4ldw_A2e-622325083310Auxin response factor 1
4ldw_B2e-622325083310Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0846690.0AB084669.1 Nicotiana tabacum NtWAF mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764984.10.0PREDICTED: auxin response factor 17-like isoform X5
RefseqXP_016487502.10.0PREDICTED: auxin response factor 17-like isoform X6
RefseqXP_016487503.10.0PREDICTED: auxin response factor 17-like isoform X6
RefseqXP_016487504.10.0PREDICTED: auxin response factor 17-like isoform X6
TrEMBLA0A1S4BF350.0A0A1S4BF35_TOBAC; Auxin response factor
TrEMBLA0A1U7VRI10.0A0A1U7VRI1_NICSY; Auxin response factor
STRINGXP_009764975.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-67auxin response factor 11