PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487496.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 676aa    MW: 76294.6 Da    PI: 5.5938
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.4e-23150250198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt+sd  ++  l++ +k a+++       ++k   +++l+++d++g++W++k+ ++++++r++lt+GW  Fv +++L +gD vvF   +++
  XP_016487496.1 150 FCKALTTSDIKSNWGLSVHRKDANKCfppldmaQEK--PTQELIVNDLQGNEWRFKHVFQGQPRRHLLTNGWGAFVTSKKLLAGDLVVFL--RDE 240
                     99****************************964433..4459************************************************..569 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     +++l+v+++r
  XP_016487496.1 241 TGKLHVGIRR 250
                     999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-35143262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-27145252IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-19149250No hitNo description
SMARTSM010191.9E-16150252IPR003340B3 DNA binding domain
PfamPF023627.3E-20150250IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59150252IPR003340B3 DNA binding domain
PfamPF065073.5E-5275336IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MEGMFWFIVG CSQAWGESSL LPQNSHGSVG AIIQSGMDSR TTTVPSSPKD TMSGSSYSSS  60
GVREDKMREA SIRWFGHVKR RGTDAPVRRC ERLALEGQRR GEAGRRSIGV EHDTEEVYAE  120
TILLPNQEQN EPSTPEFCPL EPPRPQYQSF CKALTTSDIK SNWGLSVHRK DANKCFPPLD  180
MAQEKPTQEL IVNDLQGNEW RFKHVFQGQP RRHLLTNGWG AFVTSKKLLA GDLVVFLRDE  240
TGKLHVGIRR LSYQCNSVGS STFSRQSMEG VLAVASHAFA TRSLFSVYYK PCHNRSSQFI  300
MSLSNYFEGG NHGPGVGTIS RTQQSSLDSH VKRTSGMDQM SFPQGQHMTN LLLEEDQYMQ  360
DSEAISISAR PTMMPLEIEQ QSVESLNNIH HIEDNVLQPH TAVARENNEG FIPNETVAIQ  420
AQDENFDELF KETDFPDFVN TSLDTITLDW DSDLRSTIQD FDEWLEEQEE TNPPGLQTCS  480
EDHSRQTSSI LEQPTSSQVM SISSTPSRIP YKGPGRGDEQ VPWGRYQVAR RCLPILNRVV  540
SRYPDSLVNF KVASSIFQSL HLEILAELVY FLDNLTVMNL SKDQFNVAGQ HLWDLKLSGI  600
ELGWLEKRLA HIDGAFSMEN LLQRRQAVTL RMGETLATFR QLDEELGRIN KELHELSLKV  660
GPNPPMRFHP VLEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-6111033684310Auxin response factor 1
4ldw_A1e-6111033684310Auxin response factor 1
4ldw_B1e-6111033684310Auxin response factor 1
4ldx_A1e-6111033684310Auxin response factor 1
4ldx_B1e-6111033684310Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0846690.0AB084669.1 Nicotiana tabacum NtWAF mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764978.10.0PREDICTED: uncharacterized protein LOC104216589 isoform X2
RefseqXP_009764979.10.0PREDICTED: uncharacterized protein LOC104216589 isoform X2
RefseqXP_009764981.10.0PREDICTED: uncharacterized protein LOC104216589 isoform X2
RefseqXP_016487495.10.0PREDICTED: uncharacterized protein LOC107807599 isoform X2
RefseqXP_016487496.10.0PREDICTED: uncharacterized protein LOC107807599 isoform X2
RefseqXP_016487497.10.0PREDICTED: uncharacterized protein LOC107807599 isoform X2
TrEMBLA0A1S4BF880.0A0A1S4BF88_TOBAC; Auxin response factor
TrEMBLA0A1U7VJ900.0A0A1U7VJ90_NICSY; Auxin response factor
STRINGXP_009764975.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.12e-66auxin response factor 11