PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 29749.8 Da PI: 6.7705 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.8 | 1.7e-26 | 11 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp.k...kvka..eekewyfFskrdkkyatgkrknratksgyWkat 86 lppG rF P+d++l+++yL k ++++ +++ + i+e+d+y+++P +Lp + k+ +++w+ F+ r k +r + gyWk+ XP_016487438.1 11 LPPGTRFYPSDKQLICYYLSSKNSADHrndFQF-NLIREIDLYNFDPFNLPdSacfKYGRgsLKRHWFCFVARVLKG-----GRRRAGGGYWKKR 99 79********************88887433333.56**************953655333311233566666555543.....2445689****** PP NAM 87 gkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 g+ ++v+ + ++ +vg++k++vfy g ++++ktd +m ey+l XP_016487438.1 100 GRIRDVMGEgaGKVVVGTRKSFVFYLGdCIKTAVKTDLLMYEYAL 144 *******99777788**********983457788*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-33 | 7 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.855 | 11 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-16 | 12 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGDPNPMSFS LPPGTRFYPS DKQLICYYLS SKNSADHRND FQFNLIREID LYNFDPFNLP 60 DSACFKYGRG SLKRHWFCFV ARVLKGGRRR AGGGYWKKRG RIRDVMGEGA GKVVVGTRKS 120 FVFYLGDCIK TAVKTDLLMY EYALTGNPMA SFVLCRVFIK SHYRNNLSEH VFSSYGEETL 180 AAVRHVGIQC DGTAVSVTES KMHDENTVDL ENDSQALIEP VAKQQIDLES GGPPVLNGFS 240 AQELTAILEG DFIELDDLLC PLSGIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-25 | 5 | 161 | 10 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-25 | 5 | 161 | 10 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-25 | 5 | 161 | 10 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-25 | 5 | 161 | 10 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-25 | 5 | 161 | 13 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-25 | 5 | 161 | 13 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-25 | 5 | 161 | 13 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-25 | 5 | 161 | 13 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-25 | 5 | 161 | 13 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-25 | 5 | 161 | 13 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-25 | 5 | 161 | 13 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-25 | 5 | 161 | 13 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-25 | 5 | 161 | 10 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-25 | 5 | 161 | 10 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 93 | GGRRRAGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487437.1 | 0.0 | PREDICTED: NAC domain-containing protein 19-like isoform X1 | ||||
Refseq | XP_016487438.1 | 0.0 | PREDICTED: NAC domain-containing protein 19-like isoform X1 | ||||
TrEMBL | A0A1S4BF31 | 0.0 | A0A1S4BF31_TOBAC; NAC domain-containing protein 19-like isoform X1 | ||||
STRING | XP_009627220.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 5e-27 | NAC domain containing protein 3 |