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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016487233.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
HD-ZIP |
| Protein Properties |
Length: 300aa MW: 34356.3 Da PI: 5.6528 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016487233.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56 | 6.9e-18 | 87 | 140 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
XP_016487233.1 87 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 140
456899***********************************************9 PP
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| 2 | HD-ZIP_I/II | 130.6 | 6.2e-42 | 86 | 178 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+++a+k+en++L++++++L++e+++
XP_016487233.1 86 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRQFEAIKAENDALQSQNQKLHAEVMA 178
69**************************************************************************************99875 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009744 | Biological Process | response to sucrose |
| GO:0048826 | Biological Process | cotyledon morphogenesis |
| GO:0080022 | Biological Process | primary root development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MTCTNEMDFF PANFMLQTSH EDEHQPSTSL TPILPSCSPQ DFHGIASFLG KRSMSFSGME 60
AINNNNCEEN HNGEEDLSDD GSQAGEKKRR LNMEQVKTLE KNFELGNKLE PERKMQLARA 120
LGLQPRQIAI WFQNRRARWK TKQLEKDYEI LKRQFEAIKA ENDALQSQNQ KLHAEVMALK 180
NRDQPTESIN LNKETEGSCS NRSENSSEIK LDISRTPAID SPLSTHHPIT SRPFFPPSIR 240
PNNNGVAQLF NMNPNTISRP DLKLMDQNST VKEESSLSNM FCGIDDQTAF WPWLEQQHFN
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 134 | 142 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF011556 | 1e-150 | AF011556.1 Lycopersicon esculentum jasmonic acid 1 (LEJA1) mRNA, partial cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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