PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016486840.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

DBB

Protein Properties

Length: 176aa MW: 19658.4 Da PI: 7.3745

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.6	1.1e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H XP_016486840.1 4 LCDVCESAAAILFCAADEAALCRACDEKVH 33 7**************************998 PP
2	zf-B_box	29.4	1.7e-09	52	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ XP_016486840.1 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtHS 92 6799**************************99966566675 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.5E-8	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.153	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	9.98E-7	3	45	No hit	No description
Pfam	PF00643	3.5E-6	3	42	IPR000315	B-box-type zinc finger
SuperFamily	SSF57845	6.64E-5	48	88	No hit	No description
SMART	SM00336	4.2E-10	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.243	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.4E-7	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	3.79E-7	54	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAKP NDVPRCDICE 60 NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HSRYLLLRQK VEFPGDKPGP TEELARKTLD 120 PGENKREYSH SPKPMVEDNQ QNRRFSPVPV SDGSADDHAK KDKMIDLNVK PNRYHG

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	3e-48	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599859.1	1e-129	PREDICTED: B-box zinc finger protein 19-like
Refseq	XP_016486840.1	1e-129	PREDICTED: B-box zinc finger protein 19-like
Swissprot	C0SVM5	3e-71	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A1S4BD33	1e-128	A0A1S4BD33_TOBAC; B-box zinc finger protein 19-like
STRING	XP_009599859.1	1e-128	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3175	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	1e-73	DBB family protein