PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016486813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 788aa MW: 90304.9 Da PI: 7.506 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94.5 | 1.3e-29 | 80 | 174 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn YA++vGFs+r+s s++s+r+g i++r fvC +eg+r e++k + +r+raetr+gCka+l+vk ++ g+w+v+ +++eHnHel+p XP_016486813.1 80 FYNLYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAREGFRVEKEKPgrdggGARIKRPRAETRVGCKAMLVVKIQNLGRWVVSGFVKEHNHELVP 174 9*****************************************99999999999999*************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-27 | 80 | 174 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.4E-32 | 295 | 387 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 4.4E-10 | 564 | 609 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.756 | 575 | 611 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.5E-6 | 586 | 613 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MELEPLGIRN DVIEFDMFGL GVGDETIDIE HPIEGGENNQ LLEPFDGIVS GRISGEVYGD 60 MNLEPYEGME FESEEAAKAF YNLYARRVGF STRVSMSRRS RRDGAIIQRS FVCAREGFRV 120 EKEKPGRDGG GARIKRPRAE TRVGCKAMLV VKIQNLGRWV VSGFVKEHNH ELVPPDKVHC 180 LRSHRHVSGR AKSLIDTLQG AGIGPSGIMS ALIKEYGGIR SVGFTERDCR NYMRSSKQRT 240 LGGDPQTLLD YLKQKHLENP SFFYAVQGDE DHCMSNIFWA DPKARTNFSY FGDTVTFDTT 300 YRSNRYRLPF APFTGVNHHG QPVLFGCALL INESKASFSW LFSTWLMAMC GKPPVSITTD 360 HDRVIRLAVR QVFPEARHRF CKWHIFKECQ EKLSHVLSEH INFEAEFHKC VSLTEFIEEF 420 EACWFTLIDK YDLGENEWLQ AIYADRKQWV PVYLRDTFFA EMSIMQHSDS MNSYFDGYVN 480 ASTTLQQFIK LYEKAVESRY EKEVKADYDT MHIGPALKTP SPMEKQAAEI YTRKLFIKFQ 540 EELVETLTFL ATKVDDNEAT TVFQVAKFGE SHKSYLVHYN VREIKASCSC QMFEFSSLLC 600 RHILTVFRVT NVLTLPPCYV LKRWTRNAKS GLMLEEQTCN LLNSYQESFN DRYNNLQREA 660 FKYVDEGAKD EECYQVAMDA LREAANKVAI FNKTGAGVSN SGGTCKEVFA TLESRVNNPF 720 EARQLSGGPS TPVDEQDKKI QKLTRKLERA RQKCELYRTN LMTVLKDIEQ QKLQLTVKVQ 780 SIKLGMKG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016486813.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1S4BDA4 | 0.0 | A0A1S4BDA4_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
STRING | XP_009775261.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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