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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016486540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19897.4 Da PI: 8.4774 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 5e-17 | 31 | 79 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g XP_016486540.1 31 YKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 79 9*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 20 | No hit | No description |
SMART | SM00380 | 7.2E-37 | 30 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 30 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.92E-26 | 30 | 89 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-21 | 30 | 88 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-30 | 30 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-11 | 30 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 69 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEVDGGRSGG AAVVGGGGGC CSGKIKKERI YKGIRMRKWG KWVAEIREPN KRSRIWLGSY 60 STPVAAARAY DTAVYYLRGP SARLNFPELL VGDGGLSDLS AASIRKKAVE VGARVDAMQN 120 SLAIHDHNHD HDHDQQRPRE SRNHCCENGS PAQLKPCWFQ EKPDLNLKPE PEDPELEYW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 31 | 94 | 15 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016486540.1 | 1e-131 | PREDICTED: ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9FH94 | 2e-48 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A1S4BC84 | 1e-130 | A0A1S4BC84_TOBAC; ethylene-responsive transcription factor ERF011-like | ||||
STRING | XP_009600167.1 | 1e-130 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 5e-44 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
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