PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486485.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 181aa    MW: 20158.4 Da    PI: 9.9221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00044668123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+F++   L  H  +H
  XP_016486485.1 46 FECKTCNKRFPSFQALGGHRASH 68
                    89**********99999998887 PP
2zf-C2H214.40.0001190112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ Fs    L  H+r+H
  XP_016486485.1  90 HECSICGMEFSLGQALGGHMRRH 112
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0754668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1184673IPR007087Zinc finger, C2H2
SuperFamilySSF576674.23E-946112No hitNo description
PfamPF139128.5E-134670IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-487113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.06790112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.11890117IPR007087Zinc finger, C2H2
PfamPF139121.3E-990115IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTAIKRSRED DMQVEAEAMA NCALMLLSRL NNNNTTSTDR DYDNGFECKT CNKRFPSFQA  60
LGGHRASHKR PKLLAGAGEF LVQSKKNKMH ECSICGMEFS LGQALGGHMR RHRDEINKTS  120
TVAGKTMIPV VGKKIIPVLK KSNSSKRIFC GLDLNLTPDI DVDLKLWPTA PVSSPILRCF  180
F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628782.11e-134PREDICTED: zinc finger protein ZAT12-like
RefseqXP_016486485.11e-134PREDICTED: zinc finger protein ZAT12-like
SwissprotQ9SLD46e-34ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S4BC321e-133A0A1S4BC32_TOBAC; zinc finger protein ZAT12-like
STRINGXP_009628782.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-35C2H2 family protein