PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486315.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 563aa    MW: 63817.8 Da    PI: 6.7979
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486315.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.8e-094815191854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e++ LA k gLt +qV++WF N R +
  XP_016486315.1 481 MFQNflHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVR 519
                     5887779******************************88 PP
2BELL742.4e-24355422371
            BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                     ++ ++kk +L+ ll+ Vd++Y+q+ +++++vis+F+av++l++  +++++Al++iS  +++L+++i++ 
  XP_016486315.1 355 MDSEAKKKHLVALLQVVDDQYNQCLDEIHMVISAFHAVTELDP-SIHARFALQTISSLYKNLRERISNY 422
                     67899**************************************.9*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.7E-19289421IPR006563POX domain
PfamPF075261.6E-25295420IPR006563POX domain
PROSITE profilePS5007111.224460523IPR001356Homeobox domain
CDDcd000862.97E-11463524No hitNo description
SMARTSM003895.5E-7463527IPR001356Homeobox domain
SuperFamilySSF466891.63E-15465532IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-26466529IPR009057Homeodomain-like
PfamPF059204.1E-15480519IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAEPHPIIDE NLLHTASIPI SFPDRIGLNN QNHIMDGQNH IMDGHEIPIP FMLQGEAINS  60
SQAFLSLPNF PRAVDNGAIH NVLPMRNRTK EFLLSTSYPI SNSYTEDQYM EGIPISALSL  120
ANLLATRNAM PENHENLAAL APLSHPVEGH KTDVLDYPTM LSHSFGSYRN YEFDSVPEIA  180
GTVAGRTGSQ PFQLTHENVN SNTWFSSETA SMSSDSPSGS SSRFSNELSL SLTSTQSAVA  240
CGTTIRDQCS DISCSGVTNH AFPQRRFDSE LTSCNSRNLS LNFGSYKPVH LSQFLTGSRY  300
LRVMQEILSE MAHLSLQNHN LVGYRGNGTE YGANTSFTLS SDDLPDEDCR IIGQMDSEAK  360
KKHLVALLQV VDDQYNQCLD EIHMVISAFH AVTELDPSIH ARFALQTISS LYKNLRERIS  420
NYILAMGEHF NRGERVVEKS FETSFIQKQW ALQQLKRKDH QLWRPQRGLP ERSVSVLRAW  480
MFQNFLHPYP KDAEKQLLAV KSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNRRKIRTG  540
NHEDETNNRR NHKIIDNRLF TMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14469527563Homeobox protein Meis2
3k2a_B2e-14469527563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486315.10.0PREDICTED: homeobox protein ATH1-like
SwissprotP487311e-104ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A1S4BBL00.0A0A1S4BBL0_TOBAC; homeobox protein ATH1-like
STRINGXP_009770451.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82612327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-104homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]