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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016486152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 416aa MW: 45654.9 Da PI: 6.1848 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.8e-06 | 306 | 344 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_016486152.1 306 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 344 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.595 | 295 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-11 | 305 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-6 | 305 | 348 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-9 | 305 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.008 | 306 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAEEFQLGNG NWWDNTSISR NSTPTAASTT ISNMSSNYSN WQNTETQVDI KPRTFLNSGS 60 VLSESSGGGS GGGGGGGSRG VLSGDNNFQM MGLGLTSQPH EWNQSLLRGE KAESGFSSIL 120 QQEDLSSNNT NNYQLEASNS QQDHHWNRQK IYSGNSEDSS SVDDYKQMNF VYNINPSNNY 180 GLSQESAAQD NHVMHSSTTS SWSKFPQLLR TSPPGQQPLP PPPHSQLHFS NNTPFWNASA 240 AAMNDVPSSL FPSNLHPQLP IPTVDEKTKN TGEIRDINRM SKKTSSEISN KRPRDETPSP 300 LPAFKVRKEK MGDRITALQQ LVSPFGKTDT ASVLSEAIEY IKFLHDQIGA LSAPYMKSGS 360 SAMQHQQSNN KSEDAEGRNQ DLRSRGLCLV PVSSTFPVTN ETTVDFWTPT FGGTFR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 77 | SGGGSGGGGGGGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594898.1 | 0.0 | PREDICTED: transcription factor bHLH123-like isoform X1 | ||||
Refseq | XP_016486152.1 | 0.0 | PREDICTED: transcription factor bHLH123-like | ||||
TrEMBL | A0A1S4BBA6 | 0.0 | A0A1S4BBA6_TOBAC; transcription factor bHLH123-like | ||||
STRING | XP_009594898.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-68 | bHLH family protein |