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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016485888.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 748aa MW: 84443.4 Da PI: 5.5526 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 370.8 | 1.8e-113 | 374 | 745 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+ v+++d + a++ L+++++++sp+gd+ qRla++f+ +L+arla+++++ y+al+p++ + +e+l+a++++ +P+ k+s XP_016485888.1 374 LRTLLISCAQSVAADDRRTANEQLKQIRQHSSPTGDAYQRLASVFADGLEARLAGTGTQQYAALAPKRIT---AAEKLKAYQVYLSSCPFKKISI 465 6789*************************************************************99999...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 l aN++I +++++++H iDf+i++G+QWp L+q L++ p+gpp+lRiTg++ p++g +e+le+tg+rLak++e+++vpfe+n+++++++e+ XP_016485888.1 466 LFANKMIFHTASNARTLHLIDFGITYGFQWPILIQILSQIPSGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCERFHVPFEYNAIATQNWEN 560 *********************************************************9******************************999**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L++ +gE++aVn+ ++l++llde+v ++s+rd+vL+l+++++P+++v + + +++++ F++rf eal +ys+lfd+++a+lpr++++r XP_016485888.1 561 IKIEDLKLASGETVAVNCLFRLKNLLDETVVVDSPRDAVLSLIRKMNPDIFVQAVVNGSYSAPFFVTRFREALFHYSTLFDMFDATLPRDDQQRL 655 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ ++ ++ + + + +e+ +++++gWk+r + + S+W XP_016485888.1 656 HFEQEFYRREAMNVIACEGSERVERPETYKQWQVRNMRAGFKLLPLNQQLMQKLRCKVKGGYHRDFVFDEDGNWMLQGWKGRVVCASSCW 745 **************************************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.758 | 348 | 726 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-111 | 374 | 745 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MDPRFNPLPH PVNTFEFEDQ INLSSFEESL NHPLSYTNDY VAFGAPYNTS SPDVGNFAPS 60 SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS FYEALGKSYP 120 PSPYRTSDYV DHQLKSPDSI FWNSSEHSTS SSNTGTNSTD TQWVVDPGES RLPVESHPSE 180 YNVRPLVQSN SERSRGSLNN FNNSNAHVDS LVNPNVVSNV FTDSESILQF KRGMEEASKF 240 LPNLSQFVID LDNYTLPPKM EEVSKEAVVK VEKDEKNHSP NGTKGRKHQY PEDSDYEDER 300 SNKQSAIYVE EVELSEMFDR VLLCTDKGTG CGDVKCEMPS EVNKSSDQNG QAHGSNGGKT 360 RAKKQGTKNE AVDLRTLLIS CAQSVAADDR RTANEQLKQI RQHSSPTGDA YQRLASVFAD 420 GLEARLAGTG TQQYAALAPK RITAAEKLKA YQVYLSSCPF KKISILFANK MIFHTASNAR 480 TLHLIDFGIT YGFQWPILIQ ILSQIPSGPP KLRITGIDLP QPGFRPAESL EQTGSRLAKY 540 CERFHVPFEY NAIATQNWEN IKIEDLKLAS GETVAVNCLF RLKNLLDETV VVDSPRDAVL 600 SLIRKMNPDI FVQAVVNGSY SAPFFVTRFR EALFHYSTLF DMFDATLPRD DQQRLHFEQE 660 FYRREAMNVI ACEGSERVER PETYKQWQVR NMRAGFKLLP LNQQLMQKLR CKVKGGYHRD 720 FVFDEDGNWM LQGWKGRVVC ASSCWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 9e-45 | 357 | 747 | 1 | 379 | Protein SCARECROW |
5b3h_D | 9e-45 | 357 | 747 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016485888.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1S4BAP2 | 0.0 | A0A1S4BAP2_TOBAC; scarecrow-like protein 14 | ||||
STRING | XP_009606498.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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