PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485864.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 1056aa    MW: 118731 Da    PI: 5.8571
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.11.3e-56201363118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl++ ei++iL n++k+++t e+++rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+ee+ +fqr
  XP_016485864.1  20 SEvQHRWLRPAEICEILRNYRKFHITPEAPHRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEEDDNFQR 114
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+Le++l +iv+vhylevk
  XP_016485864.1 115 RSYWMLEQDLMHIVFVHYLEVK 136
                     *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.7715141IPR005559CG-1 DNA-binding domain
SMARTSM010767.3E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4922135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.1E-6468556IPR013783Immunoglobulin-like fold
PfamPF018338.7E-7470555IPR002909IPT domain
SuperFamilySSF812962.18E-17470556IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.203.2E-17653766IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.961653774IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.26E-17654764IPR020683Ankyrin repeat-containing domain
CDDcd002041.72E-15666762No hitNo description
SMARTSM002483400670699IPR002110Ankyrin repeat
PROSITE profilePS500888.816670702IPR002110Ankyrin repeat
SMARTSM002480.0036703732IPR002110Ankyrin repeat
PROSITE profilePS500889.484703735IPR002110Ankyrin repeat
SMARTSM00248900742771IPR002110Ankyrin repeat
SMARTSM000155877899IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.31E-7877928IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.968878907IPR000048IQ motif, EF-hand binding site
PfamPF006120.0049879898IPR000048IQ motif, EF-hand binding site
SMARTSM000159.4E-4900922IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56901925IPR000048IQ motif, EF-hand binding site
PfamPF006127.6E-5903922IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1056 aa     Download sequence    Send to blast
MADCGSDPPG FRLDITQILS EVQHRWLRPA EICEILRNYR KFHITPEAPH RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKA NVGCVRSIKS AHSNYLNDCS LSDSFPRSLK KLASVNADST  180
SVASTLTSAH EEAESEDSHQ ACSRFQSYPE RASGMDRHLV ENRDAIYSSY GSPQSSVEYT  240
SLSSIDGGGK CGRGNFASGP QRTIDLGSQE PVSQHCSNGE MVCQDDFKNN LSVQRNWQYS  300
FGDSASQFHG QIVNQDLIAD SSYDLVNSFH NKNLSSDLYT GRGQSYLYPD EQEEQLTQLN  360
IQYLNSLVEV QGDFNQENSM DMLGLGDYST IKHPHLNSVK MEEGLKKVDS FSRWVVKELE  420
DVEELHMQRT NRISWNVIDT EDDGSCLPTQ LHVDSDSLNP SLSQEQVFSI IDFSPNWAYS  480
NLETKVLITG RFLKSEGELI ECKWSCMFGE VEVPAEVLAD GVLRCHAPPH KPGVLPFYVT  540
CSNRLACSEV REFEYRLGAY QEIGAANVSA TEMHLLERIE SLMSLGPVSS CHSSDSMEAA  600
KEKHSTVNKI ICMMEEENQQ MIERASDYDT SQCGVKEDLF LERKLKQNFY AWLVRQVTDD  660
GRGRTAIDDE GQGVLHLAAA LGYDWALKPI LASGVSVDFR DMNGWTALHW AAFYGREKTV  720
VGLVSLGASP GALTDPSAEF PLGRTPADLA SANGHKGISG FLAESSLTTH LSKLTVTDAT  780
EELASEVSGA KVGETVTERV AVTTTGDDVP DVLSLKDSLA AIRNATQAAA RIHQIFRVQS  840
FQRKQIIERS DNELSSDENA LSIVASRACK LGQNNGIAHA AATQIQKKFR GWNKRKEFLL  900
IRQKIVKIQA HVRGHQVRKK YKPIIWSVGI LEKVILRWRR KRSGLRGFRS EVVINKPSIQ  960
DDSLPEDDYD FLKEGRKQTE VRMQKALARV KSMTQYPEGR AQYRRLLTAA EGLREVKQDG  1020
STCIQESSED TSYPEEELFD VENLLDDDTF MSIAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588100.0JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485864.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1S4BAF30.0A0A1S4BAF3_TOBAC; calmodulin-binding transcription activator 2-like isoform X1
STRINGXP_009600617.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]