PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016485756.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 326aa MW: 35944.6 Da PI: 10.0854

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016485756.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.2	7.8e-17	36	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v+k++++rg +rspk qCk+k+e+++kry+ + +++ + s++p++ +l+ XP_016485756.1 36 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVSARGNsTRSPKtqtQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 120 5***********************************666654666543339*************99984.....57**9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.6E-20	34	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDQEISSKDD FFPRNKQQNY HAATGNNTSD RLKRDEWSEG AVSCLLEAYE AKWILRNRAK 60 LKGQDWEDVA KHVSARGNST RSPKTQTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD 120 LLLRGNNASA ASTSVIPPPP PAVVEPPQPA AVLPPPPIPV PPPPPPPLPT AVPIGNGGQN 180 SNGSNGVDRA AKEDIMDAKL SDNAASDKHA MDTNSSTPAL YSDDKSKSKN VKLRSMEKKS 240 KNKRKRAEGW EIGESIRLLA EVVVRSEQAR METMREIERM RAEAEAKRGE MDLKRTEIIA 300 NTQLEIAKLF ASITKGVDPS LRIGRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-105	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593617.1	0.0	PREDICTED: trihelix transcription factor ASIL2
Refseq	XP_016485756.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Refseq	XP_018624331.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1S4BA19	0.0	A0A1S4BA19_TOBAC; trihelix transcription factor ASIL2-like
STRING	XP_009593617.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12251	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	6e-56	sequence-specific DNA binding transcription factors