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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016485735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 365aa MW: 39928.9 Da PI: 5.7202 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 37 | 81 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++v+a k++G W+ I +++g ++t+ q++s+ qk+ XP_016485735.1 37 REKWTEEEHQRFVEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 81 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-16 | 31 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.971 | 32 | 86 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 6.9E-17 | 35 | 84 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-12 | 36 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-9 | 36 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-13 | 37 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.44E-10 | 39 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MISSKLETVA TQGKALTCLA NEITLKVRKP YTITKQREKW TEEEHQRFVE ALKLYGRAWR 60 QIEEHVGTKT AIQIRSHAQK FFAKVARDSG TDGDESLNAI DIPPPRPKKK PLHPYPRKMD 120 DSPITTKSVS GQPERSSSPN ASGRDSCSPD SVLSEIGSDA SEYPVAEQQS SRFSPRSCTT 180 DAHTANIISG ENDDESMTSK SNIVKEIPVA SKPVAASSSP IFNSGMECDL VPRETSCPGE 240 KLAVEAPLAS IKLFGQTVLV PDATKLALQS PGSCNSFPFK TTESEIVTNN GDVIHGFQAN 300 SQFILPVVPG NMIPPACWLL QDMLENNPEG VAAFPTTLPW WSWYQDLVYR YISSCSQTTA 360 ETAPP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151804 | 1e-100 | AC151804.1 Solanum demissum chromosome 5 clone PGEC475B22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016485734.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X1 | ||||
TrEMBL | A0A1S4BA41 | 0.0 | A0A1S4BA41_TOBAC; protein REVEILLE 1-like isoform X1 | ||||
STRING | XP_009618565.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 2e-38 | MYB_related family protein |