PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485356.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 414aa    MW: 45369.6 Da    PI: 7.5418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12342387655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l P+     +k  + a++L +Av+YIk+Lq
  XP_016485356.1 342 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 387
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-16339404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-12340391No hitNo description
Gene3DG3DSA:4.10.280.104.7E-15341403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-9342387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MFSSTVPISI EMDKFNSFLF ASGGGGSSNF KNGGELQGME NEFLRNKEIM SSDYFQQQSS  60
QIHQQQSNNN GGGLTRYRSA PSSFFAGILD GDGNNSGDNF ITHDGSSSSD SESMFTALLN  120
NNNDNNNNNN NNNNNNVTVS GTRDLNDQIS KNQLQFASSS SSSMKQEIGE EIKFASSAMG  180
SYGVGVQMQS GVRLSNVNGG GSNNLMRQSS SPAGFFNGFD ITREVGNYRA SSGANMSFSS  240
AQSSTSNFMP SIAENESWND SSFHSLKRNR DGDLKVFSND FNGITSPNGE SRNYTTSGLT  300
HHLSLPKTSS EMAAIEKYLQ FQQDSVPCKI RAKRGCATHP RSIAERMRRT RISERMKKLQ  360
DLFPNMDKQT NTADMLDLAV DYIKDLQKQV QTLTDKKAKC SCPSKQLQYS NGTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3274391e-70JF327439.1 Nicotiana attenuata clone NA541 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485356.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A1S4B8Y60.0A0A1S4B8Y6_TOBAC; transcription factor bHLH130-like
STRINGXP_009757642.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-59bHLH family protein