PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016485342.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 439aa MW: 50041.5 Da PI: 9.5015

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016485342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.3e-27	31	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a ++++++++gk+++t+++++HnH+l XP_016485342.1 31 CYNEYAAAIGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-QTVQKHRKETRTGCLAYIVISRQSNGKFRITSFDEKHNHPLD 118 7****************************************999.99999*********************************97 PP
2	FAR1	85	1.2e-26	183	270	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a++ ++++++gk+++t++e++HnH+l XP_016485342.1 183 WYNEYAAAMGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-RTVQKHRKETRTGCLAHIIISRQSNGKFRITSFEEKHNHSLD 270 7****************************************999.99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-24	31	119	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	9.8E-24	183	271	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MEISSCESQG GFNVPIKLGM EFDSDEHAYE CYNEYAAAIG FSVRKEYANK NKVQGYVTSR 60 KFTCHKEGYR SKDKRDQTVQ KHRKETRTGC LAYIVISRQS NGKFRITSFD EKHNHPLDPS 120 SLSHMLPSQR KINVAQAHEV TARYGHLCQN RFMEITSSES QGGCNVPIKL GMEFDSDEHA 180 YEWYNEYAAA MGFSVRKEYA NKNKVQGYVT SRKFTCHKEG YRSKDKRDRT VQKHRKETRT 240 GCLAHIIISR QSNGKFRITS FEEKHNHSLD PSSLSHVLPT QRKIKVAQAH KVSVRYKHLC 300 QMFSQISSEA SESKEGYELA AKCANELVVK LKHVKKNESH DDSAPSKSIE NELSETVFID 360 NTNATKVTGL KRKQPTCRSK TLTMSFMEMA KRKNNTSLLK SPQCQTDKKL DHLPSLLSCQ 420 VTCPSLSDAS MTTDVSFHD

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MEISSCESQG GFNVPIKLGM EFDSDEHAYE CYNEYAAAIG FSVRKEYANK NKVQGYVTSR  60
KFTCHKEGYR SKDKRDQTVQ KHRKETRTGC LAYIVISRQS NGKFRITSFD EKHNHPLDPS  120
SLSHMLPSQR KINVAQAHEV TARYGHLCQN RFMEITSSES QGGCNVPIKL GMEFDSDEHA  180
YEWYNEYAAA MGFSVRKEYA NKNKVQGYVT SRKFTCHKEG YRSKDKRDRT VQKHRKETRT  240
GCLAHIIISR QSNGKFRITS FEEKHNHSLD PSSLSHVLPT QRKIKVAQAH KVSVRYKHLC  300
QMFSQISSEA SESKEGYELA AKCANELVVK LKHVKKNESH DDSAPSKSIE NELSETVFID  360
NTNATKVTGL KRKQPTCRSK TLTMSFMEMA KRKNNTSLLK SPQCQTDKKL DHLPSLLSCQ  420
VTCPSLSDAS MTTDVSFHD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485342.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3
TrEMBL	A0A1S4B924	0.0	A0A1S4B924_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X3
STRING	XP_009765927.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-32	FAR1-related sequence 7