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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016485053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 255aa MW: 28146 Da PI: 8.624 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.5 | 1.2e-15 | 185 | 219 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C++Cg ++ Tp +Rrgp+g++tLCnaCGl+++ k XP_016485053.1 185 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANK 219 *****99999**********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 9.476 | 76 | 111 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.2E-6 | 80 | 101 | IPR010399 | Tify domain |
Pfam | PF06203 | 6.7E-15 | 116 | 157 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.709 | 116 | 158 | IPR010402 | CCT domain |
SMART | SM00401 | 4.4E-8 | 179 | 237 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.38E-9 | 180 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-13 | 183 | 219 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.30E-11 | 184 | 219 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 185 | 212 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.4E-13 | 185 | 219 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEAANTRAIG FEEEYMNVAI RVDEYGGGGF NADDISGGCE SSGTEELQHV CSSVPPLSAC 60 PVVDSDGRVL AAMPMPSRRT SELTISFEGQ VYVFPAVTPD KSVDNDAPTR PNISRRIASL 120 IRFREKRKER CFEKKVRYTC RKEVAQRMHR KNGQFASLKD GEKTYAGNID SGDSIPHPEP 180 TLRRCQHCGI SESETPAMRR GPSGPRTLCN ACGLMWANKV LHSGSACSFC PSPQPKKIRF 240 LKLTLLMLSS FNHRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 6e-47 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016485053.1 | 0.0 | PREDICTED: GATA transcription factor 20-like isoform X2 | ||||
Swissprot | Q5Z4U5 | 7e-43 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A1S4B8D7 | 0.0 | A0A1S4B8D7_TOBAC; GATA transcription factor 20-like isoform X2 | ||||
STRING | XP_009776483.1 | 1e-154 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 6e-33 | ZIM-LIKE 2 |