PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 283aa MW: 31381.6 Da PI: 8.9144

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016485029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G g+W++ + g+ R++k+c++rw +yl XP_016485029.1 14 KGAWTKEEDQRLINYIRSHGEGCWRSLPTAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	59	1.1e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ XP_016485029.1 67 RGNFTEEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.398	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.4E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.61E-10	16	61	No hit	No description
PROSITE profile	PS51294	28.499	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-28	65	117	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	9.42E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009611	Biological Process	response to wounding
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR SHGEGCWRSL PTAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQSHRPLN AAATTTTASA ATTTTKNICM DFKNNVDQKP NIINQRNNTT DSSYDETKCN 180 SGTTEETKPL EIPQKSSQQL MINLELSIGL PLHTKTDHIS SAESTASYNF LAAVAPPQTA 240 AVPVTAAAEM VAKTVCLCWQ IGFQGGGQSC GKCKTATGFY RYC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-30	14	116	7	108	B-MYB
1h8a_C	5e-30	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00053	PBM	Transfer from AT1G22640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485029.1	0.0	PREDICTED: myb-related protein 330-like
Swissprot	P81395	1e-108	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A1S4B831	0.0	A0A1S4B831_TOBAC; myb-related protein 330-like
STRING	XP_009600359.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-90	myb domain protein 3

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]