PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016484728.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARR-B | ||||||||
Protein Properties | Length: 657aa MW: 71555.4 Da PI: 6.5053 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.8 | 7.9e-26 | 209 | 265 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ...kYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ k+Rl XP_016484728.1 209 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQenqKFRL 265 79*******************.****************************73337776 PP | |||||||
2 | Response_reg | 76.9 | 7.1e-26 | 25 | 133 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + +++l+q+l+k +y +v+++++++ al+ll+e++ +D++l D+ mp+mdG++ll+ e++lp+i++++ g +++ + ++ G XP_016484728.1 25 VLVVDDDIVCLRILEQMLRKCKY-SVTTCTQATVALNLLRERRgsFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRTNLVMRGVQHG 117 89*********************.***************999999*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ eel + XP_016484728.1 118 ACDYLIKPIRDEELKN 133 *************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 7.5E-160 | 2 | 652 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-41 | 22 | 176 | No hit | No description |
SuperFamily | SSF52172 | 2.13E-35 | 22 | 147 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 7.4E-30 | 23 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.806 | 24 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.1E-23 | 25 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.74E-27 | 26 | 138 | No hit | No description |
PROSITE profile | PS51294 | 11.669 | 206 | 265 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-16 | 206 | 269 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-27 | 207 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-22 | 209 | 259 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-6 | 211 | 259 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence Send to blast |
MASMSGDGAT CKSEATDKFP VGLRVLVVDD DIVCLRILEQ MLRKCKYSVT TCTQATVALN 60 LLRERRGSFD VVLSDVHMPD MDGFKLLELV GLEMDLPVIM MSGDGRTNLV MRGVQHGACD 120 YLIKPIRDEE LKNIWQHVVR KKCSFSKEPE YSGSLDDNDR HKRGNDDAEC ASSVIEGADG 180 VLKPQKKKRD AKEEDETEME NDDPTTAKKP RVVWSVELHQ QFVSAVNQLG IDKAVPKRIL 240 ELMNVPGLTR ENVASHLQEN QKFRLYLKRL SGVAQQQGGF PSTYCGPIEQ NPKLGSLGRF 300 DIQALAASGQ IPPETLTALH AELLGRSTGN LVLPSVEQPD LLQASLQQAK CIPVDHVVAY 360 GQPLMKCPPS ISNPKLLSQP MMSAEDVHSG FGSWRAKNIC MVPSSNLTGL AAPDSNMLMA 420 MMQHQQQWKK QQQLEQQQKQ SGLSEANHLI NVKPSCLVLP YQSPDNFQVG DSSGSISQAC 480 SLSKSSIIDY SVLSPQSNNS SGVVQVLDRE LKPACGLNRL STAASFSPSV SSCSVHADNS 540 VGLQLHNSSL AFGASKQLPG FVTNHLGFPV SCNSKSSQIL DQGPTRNSGV GKAASIPSRF 600 AVDESDSPMC NFSTAKVYTE DTKVKQEANM NIMENAKVGP ALFQNFPSGD LMSVFSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-21 | 205 | 271 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF412541 | 0.0 | JF412541.1 Nicotiana tabacum RRB1 type-b response regulator mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016484728.1 | 0.0 | PREDICTED: two-component response regulator ORR21-like isoform X1 | ||||
Swissprot | A2XE31 | 1e-147 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
Swissprot | Q8H7S7 | 1e-147 | ORR21_ORYSJ; Two-component response regulator ORR21 | ||||
TrEMBL | A0A1S4B7F7 | 0.0 | A0A1S4B7F7_TOBAC; Two-component response regulator | ||||
STRING | XP_009599319.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7749 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-115 | response regulator 2 |
Publications ? help Back to Top | |||
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