PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484656.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 302aa    MW: 32168.3 Da    PI: 5.9703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09152196554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  XP_016484656.1 152 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 196
                     99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15145206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14149206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-7152196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MANNPSEGPD DFFDQILGFP AYNGAEQNLA GNDGGAIPPA MMLQLNSGDV SGQFSGVGLG  60
VGLGGGGGGF HHPSQSGSFP LGLSLEGGKS GFMKMDDVSA VPGRRFRDDV VDSRASSSVK  120
PGFHGQPMPS MPHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT  180
DRAVMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPISSVEEES SEGGNNQPAW  240
EKWSSDGTER QVAKLMEENV GSAMQFLQSK ALCIMPISLA SAIYHSQPPD TSSLIKPETN  300
PP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0174801e-116AB017480.2 Nicotiana tabacum mRNA for chloroplast FtsH protease, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776898.10.0PREDICTED: transcription factor UNE12-like
RefseqXP_016484656.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-116UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S4B7010.0A0A1S4B701_TOBAC; transcription factor UNE12-like
TrEMBLA0A1U7WE070.0A0A1U7WE07_NICSY; transcription factor UNE12-like
STRINGXP_009776898.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]