PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016484627.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 125aa MW: 14476.5 Da PI: 9.9989 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141.8 | 4.1e-44 | 12 | 125 | 1 | 112 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_016484627.1 12 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEicRIGSgPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 105 69****************************.9***************954555442556************************************ PP NAM 93 lskkgelvglkktLvfykgr 112 + ++++ +g++ktLvfy+gr XP_016484627.1 106 YLSNSKRIGMRKTLVFYTGR 125 *****************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-44 | 4 | 125 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.615 | 12 | 125 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-22 | 13 | 123 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 125 aa Download sequence Send to blast |
MMSGAGNGQL SVPPGFRFHP TDEELLYYYL RKKVSYEAID LDVIREVDLN KLEPWDLKEI 60 CRIGSGPQNE WYFFSHKDKK YPTGTRTNRA TAAGFWKATG RDKAIYLSNS KRIGMRKTLV 120 FYTGR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-36 | 6 | 125 | 9 | 124 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 2e-60 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619245.1 | 1e-88 | PREDICTED: NAC domain-containing protein 76 isoform X1 | ||||
Refseq | XP_009619246.1 | 1e-88 | PREDICTED: NAC domain-containing protein 76 isoform X1 | ||||
Refseq | XP_009619248.1 | 1e-88 | PREDICTED: NAC domain-containing protein 76 isoform X2 | ||||
Refseq | XP_016484627.1 | 2e-90 | PREDICTED: NAC domain-containing protein 76-like, partial | ||||
Swissprot | Q9MA17 | 2e-77 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A1S4B705 | 5e-89 | A0A1S4B705_TOBAC; NAC domain-containing protein 76-like | ||||
TrEMBL | A0A1S4C031 | 8e-87 | A0A1S4C031_TOBAC; NAC domain-containing protein 76 isoform X2 | ||||
TrEMBL | A0A1U7XSY7 | 8e-87 | A0A1U7XSY7_NICSY; NAC domain-containing protein 76 isoform X2 | ||||
STRING | XP_009619245.1 | 4e-88 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-68 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|