PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484581.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 490aa    MW: 54654.9 Da    PI: 5.7311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.3e-14306349755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+ri+++++ Lr l+P+ +      K++K++iL  A++YI++Lq
  XP_016484581.1 306 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELQ 349
                     57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-178159IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.29E-14297353No hitNo description
PROSITE profilePS5088815.605299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-17301366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-15305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17306367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11307349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MERALEWLRP LIDSNNWEYC VVWKLGDDPS RFIEWIGCCC AGAKAVDVNV KKENGGQLTF  60
TTLCRDSQIQ HPIRTKACEA LAHFPLSISL YSGIQGEVVT SNEPKWINHT EVSNSNLSHY  120
PWQELKGTLV LIPVAGGLVE LYNSKLIYKD QKTIDFIINR FKLGSENANS STAKREDQPL  180
DSFPFEKLLF CAPPLQYTSF PSSAPLISQV SESSANPSIQ GSPTGSIPSN ELTLCHSTSD  240
HLSRNIPLSR CSDGDFEHTE LQCSGNLSRM EGTVFPWNQE NYIIAGDGYT MGKKRQRGPY  300
QSKNLVTERK RRNRIKDGLF ALRALVPNIS KMDKVAILGD AIDYINELQE NVKLYQAELN  360
EIAAEVSNNE SSEVVLSDMS EMSKVTGPAN EKTQISLNTT KRTRMEFLMK GQVEVNQIGA  420
REFLLKVFGS HKPGGFTQLL EAMNSLGIEV VNTNFTTSGE EILSIFIARA NENRVVEAQQ  480
LRSSLIELTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297GKKRQRG
2292311KKRQRGPYQSKNLVTERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484581.10.0PREDICTED: transcription factor bHLH90-like isoform X1
TrEMBLA0A1S4B6S60.0A0A1S4B6S6_TOBAC; transcription factor bHLH90-like isoform X1
STRINGXP_009768125.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-74bHLH family protein