PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484127.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 361aa    MW: 41327.3 Da    PI: 9.7198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-05119142123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg++F +++ L++H +  H
  XP_016484127.1 119 YFCRVCGRRFYTNEKLVNHFKQiH 142
                     78*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.28E-5115145No hitNo description
Gene3DG3DSA:3.30.160.605.1E-4116144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.78119147IPR007087Zinc finger, C2H2
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
CDDcd061673.05E-14136271No hitNo description
PfamPF019365.1E-8191271IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.6E-7204259IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMKLVKASTF IHAIRSYKRF CHFESKSLLG FGSLGSSVRT NVGIFWDLDN KPPKSFPPFE  60
AATKLKNAAG EFGVVRYTVA YANRHAFSYV PPLVRQQRKE RKTLNSLEKS GVVKVEEPYF  120
CRVCGRRFYT NEKLVNHFKQ IHEREHTKRL NQIESARGKM RIKLVAKYAM KMDKYKNAVR  180
DVLTPKVGYG LADELKRAGF WVRTVSDKPQ AADVALRNHL VDVMDKRMVE CVVLVSDDSD  240
FVEVLKEARL RCLKTVVVGD CNDGALKRTA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV  300
LKRLEWTYDP EAEKKQYYSE VESDDSDGLF SGEDDNKDVG ASISKEDARA WWELDSRSGH  360
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770204.10.0PREDICTED: uncharacterized protein LOC104220938 isoform X2
RefseqXP_009770205.10.0PREDICTED: uncharacterized protein LOC104220938 isoform X2
RefseqXP_016484126.10.0PREDICTED: uncharacterized protein LOC107804708
RefseqXP_016484127.10.0PREDICTED: uncharacterized protein LOC107804708
TrEMBLA0A1S4B5H40.0A0A1S4B5H4_TOBAC; uncharacterized protein LOC107804708
TrEMBLA0A1U7W7H30.0A0A1U7W7H3_NICSY; uncharacterized protein LOC104220938 isoform X2
STRINGXP_009770203.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-148C2H2 family protein