PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484116.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 334aa    MW: 36624.7 Da    PI: 7.0213
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-0893117126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ G C+y ++C+FaHg
  XP_016484116.1  93 FKTKLCCKFRA-GVCPYINNCNFAHG 117
                     69*********.*************8 PP
2zf-CCCH18.24.4e-06171194326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C+ f+    C+yGd+C+F H+
  XP_016484116.1 171 GRHCKKFYTEEGCPYGDTCSFLHD 194
                     5669*****9*************7 PP
3zf-CCCH437.3e-14228253126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_016484116.1 228 WKTRICNKWETTGYCPFGSKCHFAHG 253
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-1490125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-890123IPR000571Zinc finger, CCCH-type
SMARTSM003560.008992118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.66292119IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8166196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7167196IPR000571Zinc finger, CCCH-type
SMARTSM003560.47168195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263168196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-17224258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-10224258IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8227254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422227255IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-11228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDFMGEASFA GGNMMPDSTS NGSGFDNWGP GFSDQAVWAT EDDYRAWSNG PSSETPSSSN  60
RSGSEPPQKK SRSSQGADSH VTNRSKAIGK MFFKTKLCCK FRAGVCPYIN NCNFAHGIEE  120
LRKPPPNWQE IVAEHESERG GGVMLESREE HQIPTVSSPE LRIETQRSFK GRHCKKFYTE  180
EGCPYGDTCS FLHDEQSRAR ESVAISVTPT VGGFGDNAAG ANLKPSNWKT RICNKWETTG  240
YCPFGSKCHF AHGAAELHKF GGGLMEMEGK DPLSTPPDLR QGGGSLKTTE SMVPSTISVP  300
GVQVQRPSGH RVIQKWKGPD KISKIYGDWI DDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484116.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM31e-119C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1S4B5G40.0A0A1S4B5G4_TOBAC; zinc finger CCCH domain-containing protein 12-like
STRINGXP_009621747.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-117C3H family protein