PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484077.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 494aa    MW: 57577.6 Da    PI: 9.1219
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.38.8e-1229107291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+e+A+  GFsv+k++ +k+   ++    t++C +   ++ + ++          +  +Cka+l   ++++g w+v+k +++HnH+l+p
  XP_016484077.1  29 FYKEHARLKGFSVVKNNCNKK-GGDNARYITYYCDRARIHKIKFTT----------KSNNCKARLAAVLDDSGCWRVSKAVHDHNHDLVP 107
                     9****************9998.55558999******9999887666..........7789***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-1029107IPR004330FAR1 DNA binding domain
PfamPF105514.2E-28184274IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MENEFTEKDV VVGPISGMRF RDKNSLFAFY KEHARLKGFS VVKNNCNKKG GDNARYITYY  60
CDRARIHKIK FTTKSNNCKA RLAAVLDDSG CWRVSKAVHD HNHDLVPYIS LLMAGHRSVC  120
DSLKRDLVAH KRSDIRPSKN IRLADVKDRE FFYSIDVDNI GRLRNVVWVH SHCKATYEQF  180
HDAICFDTTY LVNRYNMPCA TFIGINHHRQ PILLGRALMS HKDIDSYKLV FRTWFEAMGN  240
VHPDAIITDK CQSIKPAIAE VMPNTIHRCC IWPIFSKLPL YLSGVRPSKI ARGEFKSMVL  300
DSITVEVFER KWTEYIARYN LHTRNWFNKL YSEKEKWVPM YLDVYFWAGM LSTQRSEGMH  360
AFFDGYITRQ STLRMFVHQY ELAIGAKHVK ELEVEYKSKG FQIVCESMFK WEEQAIQCYT  420
RTMYELFKTL LRKLYHCEVS SPDDHQVVPG VEKFIVSDYS VVKKMMEIQL STLLNIHLLM  480
IILVATANGS SLEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484077.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S4B5F00.0A0A1S4B5F0_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_009781959.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-63FAR1 family protein