PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484023.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 465aa    MW: 51977.6 Da    PI: 6.7789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001786103219
                     EETTTTEEESSHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                     +C++Cgk Fs++ ++  H
  XP_016484023.1  86 VCENCGKEFSSWKSFLEH 103
                     6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-51638No hitNo description
PROSITE profilePS501578.61638IPR007087Zinc finger, C2H2
SMARTSM003556.11638IPR015880Zinc finger, C2H2-like
PfamPF139120.00481638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-580104No hitNo description
SMARTSM0035518085105IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.25E-6228251No hitNo description
SMARTSM003550.13229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076229256IPR007087Zinc finger, C2H2
PfamPF139121.3E-9229253IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SuperFamilySSF576671.25E-6291318No hitNo description
SMARTSM003550.52296318IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328296318IPR007087Zinc finger, C2H2
PfamPF139126.0E-13296319IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MACIDQEQQQ QPVFKHYCRV CKKGFVCGRA LGGHMRAHGI GDEGANLDDD DPASDWEDKF  60
GGSVKGGNKR MYQLRTNPNR QKSNRVCENC GKEFSSWKSF LEHGKCSSED VEESLVSSPC  120
SEGEEYITNG ERKGYGWSKR KRSLRTKVGT LSTSTYPSSE EDDLLLAKCL IDLANARVDT  180
SLAEPEESCA SASKEEERAR NPMTYLTPLV TTRVPLDNKA KGASSKGLFE CKACKKVFNS  240
HQALGGHRAS HKKVKGCYAA KQDQLDDSLI GDQDMNIIHD EFTLQASKSM RKSKIHECSI  300
CHRVFSTGQA LGGHKRCHWI TSNSPDSSKY NFHSHMEQIN LRSNLRKSGD ALDLNIPSHE  360
DMSRVRRDPM NPLSFEVSTE IHLHPWNTKD NSSDNYYLEE IKNNNDNNNN NNNNSLTQNV  420
EDDEADSKLK LAKLSELKDM NTSSENPSHW LQVGIGSTTE VGADS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785654.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_016484023.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1S4B5F20.0A0A1S4B5F2_TOBAC; zinc finger protein ZAT4-like
TrEMBLA0A1U7XFD10.0A0A1U7XFD1_NICSY; zinc finger protein ZAT4-like
STRINGXP_009785654.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-26C2H2-like zinc finger protein