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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016483755.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 421aa MW: 47702.9 Da PI: 8.5376 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.3 | 7.5e-50 | 42 | 168 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrF Ptdeel+++yLkkk+eg++ + evi+ev+i k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+sgyWkatgk+++v+s XP_016483755.1 42 MFPGFRFCPTDEELISYYLKKKLEGSDKCV-EVISEVEIWKHEPWDLPdKSAVQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGKERNVKS 135 579************************777.99***************666667899************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+k+tLvf++grapkg++t+W+mhey + XP_016483755.1 136 -GSNMIGTKRTLVFHTGRAPKGQRTQWIMHEYCM 168 .99*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-56 | 39 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.075 | 42 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-26 | 44 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MEDGDVSGST DENKARKIVQ RSENINGNDK NVGISVATAS TMFPGFRFCP TDEELISYYL 60 KKKLEGSDKC VEVISEVEIW KHEPWDLPDK SAVQSDNEWF FFSPRGRKYP NGSQSKRATE 120 SGYWKATGKE RNVKSGSNMI GTKRTLVFHT GRAPKGQRTQ WIMHEYCMTG NSYYQDSVVV 180 CRLRKNNEFH LNDTQGNRRN HLAVDCSTAL SGAAQLDSWD LINGGECCSK EGSSSFSSHS 240 VEKVESGSES DKLTKVLPQH NSSSHWKDCD EEDCFADIMK DDIVKLDDSS YKARQNLLPI 300 VTRKLESSTK STPQEFQDLM SHRLPFQGTA NRRLRLQTEI VPRRVEAYEA NKKNSRAADT 360 TRRLMINIIP VRRIKQWSIP LLLVSLVLAV IFLCMFGVPQ QVKWLGHLLV ITPPEVNTRP 420 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-43 | 38 | 187 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-43 | 38 | 187 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-43 | 38 | 187 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-43 | 38 | 187 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-43 | 38 | 187 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-43 | 38 | 187 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-43 | 38 | 187 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-43 | 38 | 187 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-43 | 38 | 187 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-43 | 38 | 187 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-43 | 38 | 187 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-43 | 38 | 187 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-43 | 38 | 187 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-43 | 38 | 187 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 2e-88 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975523 | 2e-88 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016483755.1 | 0.0 | PREDICTED: NAC domain-containing protein 60-like | ||||
TrEMBL | A0A1S4B496 | 0.0 | A0A1S4B496_TOBAC; NAC domain-containing protein 60-like | ||||
STRING | XP_009604784.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44290.1 | 6e-85 | NAC domain containing protein 60 |