PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483701.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 361aa    MW: 39239.5 Da    PI: 8.1794
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483701.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.25.2e-3568125359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v+YkeClkNhAaslGghavDGCgEfmps++++  ++++lkCaACgCHRnFHRre+ee
  XP_016483701.1  68 VVTYKECLKNHAASLGGHAVDGCGEFMPSPTANpVDPTSLKCAACGCHRNFHRREPEE 125
                     589******************************9*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2369125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.4E-2969123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-3170122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.20771122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.14E-18214282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-27216282IPR009057Homeodomain-like
TIGRFAMsTIGR015656.8E-24223279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDISSNTTTA IATTVKTTEA EPETPIRIQP AKPISFSNGV LKRHNSLHLP HHHGFNKNNH  60
HHHHHAVVVT YKECLKNHAA SLGGHAVDGC GEFMPSPTAN PVDPTSLKCA ACGCHRNFHR  120
REPEEPVLPN QNTIPALEYQ PHHRHHPPPP PPPHHGASGG HSSPNSPSPP PISSAYYPAS  180
APHMLLALSA GLSSPPAENN QLISPSSNPM SSANLTNPNG SGRKRFRTKF TQDQKERMLE  240
FAEKVEWKIQ KRDEELINDF CSKIGVEKGV LKVWMHNNKC KKDQATAAAA VNTVATTNLL  300
NGNNGNGFGL ISRNNTDTIA SEFHLHHESS KDNDKDHSHQ LHNNDSVSAH GVTTNGSSSS  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-192242791873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1546641e-150AF154664.1 Nicotiana tabacum clone PR56 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483701.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG03e-74ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S4B4C90.0A0A1S4B4C9_TOBAC; zinc-finger homeodomain protein 9-like
STRINGXP_009620291.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-38homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]