PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483687.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 464aa    MW: 51330.7 Da    PI: 9.8104
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.41.7e-081357149
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49
                    +++ GV+ +k  g++ A I+dp     + k+++lg+f ta+eA  a+ a 
  XP_016483687.1 13 TKFAGVHKRK-CGKYGAAIKDPI----KkKKVWLGSFKTAQEASNAYLAK 57
                    6899***999.7*********72....35******************875 PP
2AP235.72.1e-11160204452
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     +G+r+ k +g++ A Irdp    ++ kr++lg+f+t eeA +a+  ++ +
  XP_016483687.1 160 HGIRRQK-NGKYGAVIRDP----ISlKRIWLGTFDTVEEASEAYFSYKSE 204
                     69*9888.8*********8....359******************988766 PP
3AP2361.7e-11251297252
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     ++ GV+ +k +g++ +eI  p     + k+++lg+f taeeA +a+   +++
  XP_016483687.1 251 HIIGVHKNK-WGKYTSEITNPI----TkKKIWLGTFHTAEEASRAYQSKKLE 297
                     789***999.*******99972....36*****************9776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.63E-121354No hitNo description
PROSITE profilePS5103212.3911473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-121455IPR001471AP2/ERF domain
SMARTSM003801.9E-51468IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-101460IPR016177DNA-binding domain
PROSITE profilePS5103213.274158218IPR001471AP2/ERF domain
SMARTSM003801.4E-4158206IPR001471AP2/ERF domain
PfamPF008471.9E-4160206IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-10160202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-11160198IPR001471AP2/ERF domain
CDDcd000184.67E-13161198No hitNo description
PROSITE profilePS5103214.381251313IPR001471AP2/ERF domain
PfamPF008479.8E-6251294IPR001471AP2/ERF domain
SMARTSM003802.7E-6251305IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-12252299IPR016177DNA-binding domain
PRINTSPR003673.3E-5252263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-14254298IPR001471AP2/ERF domain
CDDcd000183.73E-13254291No hitNo description
PRINTSPR003673.3E-5274290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDSNSTVMDL HATKFAGVHK RKCGKYGAAI KDPIKKKKVW LGSFKTAQEA SNAYLAKQSE  60
FAAQLEPVKA NQDSSKSKSS ASATAQLMQK IPSSLLKPQG SNSTNTTSAA ERSKANGKNP  120
FIREIRKDPF QEKQGTRSSS DGCNSNTVTT SNTKAKISLH GIRRQKNGKY GAVIRDPISL  180
KRIWLGTFDT VEEASEAYFS YKSEFDKLCQ LGNKENKPKD CGQIQHESPV GASSSLDTAS  240
VGRKKRHKTT HIIGVHKNKW GKYTSEITNP ITKKKIWLGT FHTAEEASRA YQSKKLEFQK  300
LVSAKEPQST NKQTHSKQHG KKKLVNGKQS HVNCETFQSG QRIDSCEQSH SISMTRNLLG  360
TSLGTAEEAF HAYHQFKEFD FQCSTKAELQ SNVLTDSSGG EKKQEGQVDE DLWMGQWVQV  420
PGGSEVKFSV KLGLPIIDNY GSLLGEFSCL DDLSICYTDD ECFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11937KRKCGKYGAAIKDPIKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483687.10.0PREDICTED: uncharacterized protein LOC107804328
TrEMBLA0A1S4B4340.0A0A1S4B434_TOBAC; uncharacterized protein LOC107804328
STRINGXP_009766452.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.26e-15ERF family protein