![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016483203.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23510.3 Da PI: 5.7563 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.2e-18 | 22 | 72 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g XP_016483203.1 22 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 72 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-12 | 22 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-31 | 23 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-21 | 23 | 81 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-35 | 23 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.958 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 24 | 35 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.59E-31 | 24 | 82 | No hit | No description |
PRINTS | PR00367 | 1.3E-9 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MDKPQDIEGK KIKRNRDSSK HPVYRGVRMR NWGKWVSEIR EPRKKSRIWL GTFPNPEMAA 60 RAHDVAALSI KGNSAILNFP ELAGSLPRPV TLSPRDIQAA AAKAAAMDKF DNNNINITTS 120 SSSSDDSSPN NSTSNMSTSS SLSSLVSAID LATSEELTQI IELPRLGTSY FDDELKNDFV 180 YCDHSAVEGW LYPDDGGMIY SSCFEPSLLW NY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 18 | 80 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 8e-92 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016483203.1 | 1e-156 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 4e-64 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1S4B333 | 1e-155 | A0A1S4B333_TOBAC; dehydration-responsive element-binding protein 3-like | ||||
STRING | XP_009602025.1 | 1e-154 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-59 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|