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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016482996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 740aa MW: 80495.7 Da PI: 7.9942 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.6e-24 | 157 | 258 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F ++ XP_016482996.1 157 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RTA 247 99****************************9743..345679************************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++v+r+ XP_016482996.1 248 DGELRLGVRRA 258 9999**99986 PP | |||||||
2 | Auxin_resp | 117.4 | 1.2e-38 | 283 | 364 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++++F+++YnPras+s F+++++k++k+l +++s+GmRfkm++eted++e+r++G+vvgvsd+dpvrWp+SkWr+L XP_016482996.1 283 VVNAISSTNAFSICYNPRASSSGFIIPYHKFSKTLAHPFSAGMRFKMRVETEDAAEQRFTGLVVGVSDVDPVRWPGSKWRCL 364 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.7E-40 | 151 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.45E-42 | 151 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.02E-21 | 155 | 257 | No hit | No description |
PROSITE profile | PS50863 | 13.267 | 157 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.1E-22 | 157 | 258 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-22 | 157 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.0E-33 | 284 | 364 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MMCGLIDLNT VDNDDVGEET TVPVSPASSS TASGSSDLTS SSLPAVASVC MQLWHACAGP 60 LISLPKKGSA VVYLPQGHLE HLSEYPPIAY NLPPHVFCRV VDVKLRADAA SDEVYAQVSL 120 VPDNQQIEQK WRDGDIDADT EEEEIEGAGK STTPHMFCKT LTASDTSTHG GFSVPRRAAE 180 DCFPPLDYRQ QRPSQELVAK DLHGIEWKFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA 240 VLFLRTADGE LRLGVRRAAQ AKTCSNYLAA YSQLLNVSGI VDVVNAISST NAFSICYNPR 300 ASSSGFIIPY HKFSKTLAHP FSAGMRFKMR VETEDAAEQR FTGLVVGVSD VDPVRWPGSK 360 WRCLLVRWDD LDVSRHNRVS PWEIEPSGSA PVSSSLVMPS AKRTRVGFPI TKADFPIPRD 420 GIAVSDFGES SRFQKVLQGQ EILGISSPFV GFDAHSPRTA GIRCFPGFPS SGASRLGNSI 480 RTLLGDTDKS PESIGFSDSS RFNKVLQGQE TFSTPPYGRG HAGSLMQEKS RTGIIVGIQV 540 PNHVSRWSAP NQGNRSHCNP STLVPASSPP SVLSFQHPRS PASKFQAMFN HKHGKLETAT 600 QAFDMSESCS RHLASGSHAE DISRKGDTQG ISSFSFLKEQ KQTGMSYLSL GTQSSQNLVS 660 MCKTSCRIFG FPLTESKINA TRAENPAEAV YSHGLEKTFL PSSDGKLQPG PPLVTNVVGT 720 NFTKVNDLYA ARDVLLDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-110 | 48 | 389 | 18 | 357 | Auxin response factor 1 |
4ldy_B | 1e-110 | 48 | 389 | 18 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ340254 | 0.0 | DQ340254.1 Lycopersicon esculentum auxin response factor 3 (ARF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016482996.1 | 0.0 | PREDICTED: auxin response factor 3-like | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1S4B2E3 | 0.0 | A0A1S4B2E3_TOBAC; Auxin response factor | ||||
STRING | XP_009589968.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |