PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482947.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 285aa    MW: 32089.3 Da    PI: 10.1388
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000774565323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+k Fs+   L  H r H
  XP_016482947.1 45 CHVCNKGFSSGKALGGHVRIH 65
                    *****************9998 PP
2zf-C2H216.42.5e-05100119221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C++Cgk F +k +L  H+r
  XP_016482947.1 100 TCSICGKKFASKKSLFGHMR 119
                     7******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.464365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.184370IPR007087Zinc finger, C2H2
PfamPF139121.4E-64462IPR007087Zinc finger, C2H2
SuperFamilySSF576672.64E-104465No hitNo description
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576672.64E-1094121No hitNo description
Gene3DG3DSA:3.30.160.602.2E-598121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.76299126IPR007087Zinc finger, C2H2
SMARTSM003554.9E-499121IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-6101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVDKQEHRLS GTGTLWVKLN EDDDYKDEDK VQIQRKNNTP SRNICHVCNK GFSSGKALGG  60
HVRIHAQPIP WAKKRKQQMK QQEVDILRKK KMGRNQPPIT CSICGKKFAS KKSLFGHMRC  120
HPDRDWRGIH PPPTDLSKAV GGWSVTAKRG RRTNSSSSSS EEEQLRDGVH YLMLLAHGHS  180
LKDTGKLETT NSNYKTADKE EETHICRPIK RRMKKLKDLG SIQDVSIYNT VISTAATSSS  240
TNNITTTMDD HEPLLSSSSS QISCVRNNTS SRILDFDLNE LPLPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17390KRKQQMKQQEVDILRKKK
2206211RPIKRR
3209217KRRMKKLKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764490.10.0PREDICTED: zinc finger protein 225-like
RefseqXP_016482947.10.0PREDICTED: zinc finger protein 225-like
TrEMBLA0A1S4B1Z50.0A0A1S4B1Z5_TOBAC; zinc finger protein 225-like
TrEMBLA0A1U7VRH40.0A0A1U7VRH4_NICSY; zinc finger protein 225-like
STRINGXP_009764490.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.13e-20C2H2 family protein