PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016482842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 312aa MW: 35073.4 Da PI: 6.899 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.9 | 7.1e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ +reda++sl+yeA+ r+rdPvyG+vg+i+ lq++l+q++ +l XP_016482842.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNAAQREDAVNSLAYEADYRLRDPVYGCVGLISLLQHKLRQVQDDLL 101 7********************************************************************************************98 PP DUF260 96 llkee 100 +k+e XP_016482842.1 102 NAKKE 106 88876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.587 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.0E-43 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNAAQR 60 EDAVNSLAYE ADYRLRDPVY GCVGLISLLQ HKLRQVQDDL LNAKKELATY IGPSAMLPIL 120 QPQGFLQPHH MNNPSSSTMM PFNMNPMLGM PTGVPHGGQL MIRDPQQQQQ TIEAQQLAAA 180 MAAREQQEML RNYELQQQQQ QQQQHPSQQQ DIVRFNSGFD ETGSVTATGF HQMSSSPISA 240 SLALGSYENN PYNLIQQPQQ EQNNPHHHQQ IHLQPQLLLQ QPQQQTPQQP ETPRQQQRAK 300 SEEEGRSVGP SC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-48 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-48 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630099.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_016482841.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_016482842.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_016482843.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_018634530.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 6e-88 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A1S4B1P0 | 0.0 | A0A1S4B1P0_TOBAC; LOB domain-containing protein 36-like | ||||
STRING | XP_009630099.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 9e-82 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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