PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016482453.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 329aa MW: 35907.7 Da PI: 8.3427 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.5 | 1.2e-40 | 26 | 102 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCevhsk+++v++ g+ qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_016482453.1 26 CLVDGCNADLSQCREYHRRHKVCEVHSKTAKVTIGGRDQRFCQQCSRFHSLVEFDDGKRSCRKRLDGHNRRRRKPQP 102 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-32 | 21 | 87 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.684 | 23 | 100 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-38 | 24 | 105 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.9E-30 | 26 | 99 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MESSSSSSSS SKRAKAPGNI AQVAHCLVDG CNADLSQCRE YHRRHKVCEV HSKTAKVTIG 60 GRDQRFCQQC SRFHSLVEFD DGKRSCRKRL DGHNRRRRKP QPDSMAKTSG LLFTGQQGTK 120 LLSFSSQQIF PSAAAWAGVV KTDSEMVLYN NQSHINCMDN QNSFPDSSAR SYKGGNQFQF 180 MQGSDRSLPE ASIYQPLVDH PNSAVAAAVP SSGQKIFSSG LNEIVDSDRA LSLLSSAPAV 240 TREIGFSHMV QQPATIPRPQ SQSVVHSLHY GGLSQYPFAQ DFNSQPQDSA ADSHVSNNSS 300 LHFHDMLQNG ADGSSTSGGC QQTLAFMWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 26 | 99 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 99 | KRSCRKRLDGHNRRRRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC073300 | 0.0 | LC073300.1 Nicotiana tabacum NtabSPL13 mRNA for squamosa promoter binding protein NtabSPL13, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016482449.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_016482450.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_016482451.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_016482452.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_016482453.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A1S4B0J6 | 0.0 | A0A1S4B0J6_TOBAC; squamosa promoter-binding-like protein 16 | ||||
STRING | XP_009764314.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 5e-50 | SBP family protein |