PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_016482453.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 329aa MW: 35907.7 Da PI: 8.3427

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016482453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	26	102	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCevhsk+++v++ g+ qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_016482453.1 26 CLVDGCNADLSQCREYHRRHKVCEVHSKTAKVTIGGRDQRFCQQCSRFHSLVEFDDGKRSCRKRLDGHNRRRRKPQP 102 **************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-32	21	87	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.684	23	100	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-38	24	105	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.9E-30	26	99	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MESSSSSSSS SKRAKAPGNI AQVAHCLVDG CNADLSQCRE YHRRHKVCEV HSKTAKVTIG 60 GRDQRFCQQC SRFHSLVEFD DGKRSCRKRL DGHNRRRRKP QPDSMAKTSG LLFTGQQGTK 120 LLSFSSQQIF PSAAAWAGVV KTDSEMVLYN NQSHINCMDN QNSFPDSSAR SYKGGNQFQF 180 MQGSDRSLPE ASIYQPLVDH PNSAVAAAVP SSGQKIFSSG LNEIVDSDRA LSLLSSAPAV 240 TREIGFSHMV QQPATIPRPQ SQSVVHSLHY GGLSQYPFAQ DFNSQPQDSA ADSHVSNNSS 300 LHFHDMLQNG ADGSSTSGGC QQTLAFMWD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	26	99	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	99	KRSCRKRLDGHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC073300	0.0	LC073300.1 Nicotiana tabacum NtabSPL13 mRNA for squamosa promoter binding protein NtabSPL13, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016482449.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_016482450.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_016482451.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_016482452.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_016482453.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
TrEMBL	A0A1S4B0J6	0.0	A0A1S4B0J6_TOBAC; squamosa promoter-binding-like protein 16
STRING	XP_009764314.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-50	SBP family protein