PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016481996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 903aa MW: 103417 Da PI: 6.7257 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.1 | 1.1e-26 | 145 | 247 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +ra +t+Cka+++vk++ dgkw ++++e+ XP_016481996.1 145 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPDGKWIIHRFEK 239 9***************************************999999899999888776555556699**************************** PP FAR1 84 eHnHelap 91 eHnHel p XP_016481996.1 240 EHNHELLP 247 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-24 | 145 | 247 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-29 | 345 | 437 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.557 | 625 | 661 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.1E-6 | 626 | 659 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 636 | 663 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 903 aa Download sequence Send to blast |
MRWGVSLFCV ICRLDVVGFQ VSTVDIWTES CNLSRLHLQV SVQEKSIGFQ LFSSMDIDLR 60 LPSRDHDKEE EEEQNGIINM LDNEEKMHSD DGMHGMLVVV EEKMHAEDGG DMNTPVENII 120 EFKEDVNLEP LAGMEFESHG EAYAFYQEYA RSMGFNTAIQ NSRRSKTSRE FIDAKFACSR 180 YGTKREYEKS ANRPRSRQGN KQDPENATGR RACAKTDCKA SMHVKRRPDG KWIIHRFEKE 240 HNHELLPAQA VSEQTRRMYA AMARQFAEYK NVVGLKSDSK GPFEKGRNSA MEGGDINVLL 300 EFFIQMQSLN SNFFYAADVG EDQRVKNLFW VDAKARHDYA NFSDVVSFDT TYIRNKYKMP 360 LALFVGVNQH YQFMLLGCAL VSDESATTFS WVMRTWLKAM GGQAPKTVIT DHDQVLKSVI 420 SEALPSSLHY FCMWHILGKV SETLNHVIKQ NEKFMAKFEK CIYRSSTDEE FEKRWRKLVD 480 RFDLREAELI HLLYEDRVKW IPMFMRDAFL AGMSTVQRSE SVNSFFDKYV HKKTTVPEFV 540 KQYETILQDR YEEEAKADSD TWNKQPALKS PSPFEKHVAG LYTHAVFKKF QAEVLGAVAC 600 IPKREQQDET TITFGVKDYE KDQDFIVTLN EVKSEISCVC HLFEFKGYLC RHALIVLQIC 660 GVSSIPLHYI LKRWTKDAKS KYSMTDGSED VQSRVQRYNE LCYRAMKLSE EGSLSQESYS 720 FALRALDDAF GSCVTFNNSN KNILEAGTSS APGLLCVEDD NQSRSMSKTN KKKNSFTKKR 780 KVNSEPDVMA VGAADSLQQM DKLNSRPVTL DGYFGPQQSV QGMVQLNLMA PTRDNYYGNQ 840 QTIQGLGQLN SIAPTHDGYY GAQPTMHGLG QMDFFRAPSF PYGIRDEPNV RSAQLHDEAS 900 RHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013715 | 0.0 | BT013715.1 Lycopersicon esculentum clone 132560F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804946.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_016481996.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A1S4AZB0 | 0.0 | A0A1S4AZB0_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
TrEMBL | A0A1U7YSN0 | 0.0 | A0A1U7YSN0_NICSY; protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
STRING | XP_009804946.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |