PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481923.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 321aa    MW: 35973.4 Da    PI: 8.0179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017191213123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C+k+ +++  L +H   H
  XP_016481923.1 191 YQCEICNKVLKSSQALGSHKTIH 213
                     9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.27E-5432No hitNo description
PfamPF139121.1E-8629IPR007087Zinc finger, C2H2
SMARTSM003550.025628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576677.37E-9191213No hitNo description
PROSITE profilePS501579.93191218IPR007087Zinc finger, C2H2
PfamPF139125.0E-6191215IPR007087Zinc finger, C2H2
SMARTSM003550.021191213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
SuperFamilySSF576677.37E-9241268No hitNo description
PfamPF139121.5E-9245268IPR007087Zinc finger, C2H2
SMARTSM003550.17246268IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203246268IPR007087Zinc finger, C2H2
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSMEKHKCKL CSRKFSSGKA MGGHMRSHLR TLPLPPKTPP QKQDSAGRSE STLSLHSLKE  60
EEEEEIREAK YLGYGLRENP KKSCKIVDPE FLDGAGSVVV HDNESETEST KKPTRRRSKR  120
TRRIFISEEA TEVKKEKSAE FEPEPEPVSS FSDTSPEEDI AICLMMLSKD VWRSSYESDE  180
SKFRELKQGK YQCEICNKVL KSSQALGSHK TIHKKNDSYI EDKNEGIKSK ENSRQLRMKN  240
VDQKVHECPF CGKIYGSGQA LGGHKRSHLL SSSTTASSSS KIGDSLMDSS SAKFPNGFID  300
LNMPAPIEDE DFSQPEVSGV S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754453e-86HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755183e-86HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758380.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016481923.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4AZH70.0A0A1S4AZH7_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7V9840.0A0A1U7V984_NICSY; zinc finger protein ZAT9-like
STRINGXP_009758380.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-27C2H2-like zinc finger protein