PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481644.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 398aa    MW: 44563.4 Da    PI: 9.4702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000145777323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+k Fs+   L  H+r H
  XP_016481644.1 57 CHVCNKGFSSGKALGGHMRIH 77
                    *******************99 PP
2zf-C2H214.30.00012120139221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C++Cgk F++  +L  H+r
  XP_016481644.1 120 TCSICGKNFPSMKSLFGHMR 139
                     6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5155582IPR007087Zinc finger, C2H2
PfamPF139121.6E-85577IPR007087Zinc finger, C2H2
SMARTSM003550.115577IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.95E-95677No hitNo description
Gene3DG3DSA:3.30.160.608.9E-45777IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SuperFamilySSF576676.95E-9114141No hitNo description
SMARTSM003550.018119141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598119141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-4120141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.2E-8121143IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
PfamPF139120.068294317IPR007087Zinc finger, C2H2
SMARTSM0035577294316IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVDYQDHRVG NETQVWIKLK ISEKDVLKDQ KQVPVEDHEY DEEEVQIPKN INFRRICHVC  60
NKGFSSGKAL GGHMRIHVQA AKKFLSAKKG KRLVHKKRIL DLHGQLVDFD NYNNQLPPPT  120
CSICGKNFPS MKSLFGHMRC HPERAWRGIQ PPVNKNTTCL SKTASASASG EDLSKSVPGW  180
SVTAKRGRKP IADDKEQLND AVHHLMLLAN GNSLESGLTG DRCYYNKHGI PEELEITNSI  240
NSVTSKTEAH EELASHVNEK RRKKVKLRFL GDAISPVSVV NDQNPGIVTP PEKYKCNTRE  300
KSFSTHHALG GHRSSHNKFR MVIQNSNVGT MASSMIDPVN EPAASSSKNV NKNFTPIGPS  360
SSQLTSPGEV NGRRILGFDL NELPPHDDVE YFQFFQFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004542e-32AB000454.1 Petunia hybrida taz1 mRNA for tapetum-specific zinc finger protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797499.10.0PREDICTED: uncharacterized protein LOC104243918
RefseqXP_016481644.10.0PREDICTED: uncharacterized protein LOC107802631
TrEMBLA0A1S4AYL20.0A0A1S4AYL2_TOBAC; uncharacterized protein LOC107802631
TrEMBLA0A1U7YE350.0A0A1U7YE35_NICSY; uncharacterized protein LOC104243918
STRINGXP_009797499.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.18e-22C2H2 family protein