PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016481212.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 726aa MW: 83029.2 Da PI: 6.4431 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 97.3 | 1.7e-30 | 80 | 174 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn YA++vGFs+r+s s++s+r+g i++r fvC +eg+r e++k + +r+raetr+gCka+l+vk +++g+w+v+ +++eHnHel+p XP_016481212.1 80 FYNLYARRVGFSTRISMSRRSRRDGAIIQRSFVCAREGFRVEKEKPghdggGARIKRPRAETRVGCKAMLVVKIQNSGRWVVSGFVKEHNHELVP 174 9*****************************************9999999999999**************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-28 | 80 | 174 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-31 | 295 | 387 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.0E-10 | 564 | 609 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.967 | 575 | 611 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.2E-8 | 586 | 613 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MEFEPLGIRN DVIEFDMFGL GVGDETIDIE HPIEEGENNQ LMDPFDGIVS GRISGEVYGD 60 MNLESYEGME FESEEAAKAF YNLYARRVGF STRISMSRRS RRDGAIIQRS FVCAREGFRV 120 EKEKPGHDGG GARIKRPRAE TRVGCKAMLV VKIQNSGRWV VSGFVKEHNH ELVPPDKVHC 180 LRSHRHVSGP AKLLIDTLQG AGIGPSGIMS ALIKEYGGIS SVGFTERDCR NYMRSSKQRT 240 LGGDPQTLLD YLKQKHLENP SFFYAVQGDE DHCMSNIFWA DPEARSNFIY FGDTVTFDTT 300 YRSNRYRLPF APFTGVKHHG QPVLFGCALL LNESEASFSW LFRTWLMAMC GKPPLSITTD 360 HDRVIRLAVR QVFPEARHRF CKWHIFKECQ EKLSHLLSEH INFEAEFHKC VSFTESIEEF 420 EACWFTLIDK YDLGENEWLQ AIYVDRKQWV PVYLRDTFFA EISVMQRSDS MNSYFDGYVN 480 ASTTLQQFIK LYEKAVESRY EKEVKADYDT MHIGPALKTP SPMEKQAAEI YTRKLFIKFQ 540 EELVETLTFL ATKVDDNEAT TVFQVAKFGE SHKSYLVHYN VREIKASCSC QMFEFSGLLC 600 RHILTVFRVT NVLTLPPCYV LKHWTRNAKS GLMLEEQTCN LLNNCQESFN VRYKNLQLEA 660 LKYVDEGVKD EECYQVAMDA LREAAHKVAI AKKTDGGVSN SSGTCKGESA TQESHVNNPF 720 EARQLG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016481211.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1S4AX63 | 0.0 | A0A1S4AX63_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
STRING | XP_009631560.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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