PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481145.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 698aa    MW: 77611.1 Da    PI: 8.352
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07589638147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
   XP_016481145.1 589 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 638
                      6789999*******************97666689*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.25E-6391474IPR029071Ubiquitin-related domain
PROSITE profilePS500538.873395465IPR000626Ubiquitin domain
PROSITE profilePS5129416.721584643IPR017930Myb domain
SMARTSM007179.1E-8588641IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-10589639IPR009057Homeodomain-like
SuperFamilySSF466898.97E-16590671IPR009057Homeodomain-like
CDDcd116604.52E-17590640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MVSKKRLNCG FSGYQIPVIP KAPRSARKRR PCNKLDDDQI CAFELLAAVA GKLLLESESS  60
ASSNAGAPAG KYELANCRDS IKHEQVEDDK AVRSECLDQG SCIESAYIPE AAEQEQTFKN  120
GLSKPFAENK SFLEHTSTII GSYSLLKDWS DVKLESCKEV SADAQLQTKV EGGSPDLADP  180
FDIRIVEGTR KQLDDDSKQT ELTVVNSCSI KAPIEKNVNN SVLVNSDSSV QLXTVPLYRD  240
PVPCASFVKS RNNVKLGIRD DDENYFGCYR HSTKIRTFRP TSRITYRRIR KMLTSRHWKV  300
APKLKDCERS YSNDGVKSFY CNRKSKRGNE RCRFEIPSKR RKLYDHGFAV AYDQEASSKS  360
ISNSHEKGIK GDTAIPPKGA GASASVRNHQ KDPNVKFSIN SFKVPELYIE VPEMETIGSL  420
KRTVMEAVTA ILGSGLRVGV VLQGKKVRDD NRTLQQAGIS PNDNLDTLGF TLEPSFSKVP  480
LSLSPNDDTL ASASYITDQE LSRHPSSPIF ELGPPNALSD PPEAKLDKHD ESNHELEMSP  540
TTPIDQSADE AFPDFKALAI VPPVNTEALA VVPVNHKNRR SELSQRRTRR PFSVAEVEAL  600
VEAVEQLGTG RWRDVKMRAF DNADHRTYVD LKDKWKTLVH TASIAPQQRR GEPVPQELLD  660
RVLAAHSYWS QHQAKQHAKQ HAEPLKIVDA QAQNGVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-675736941118Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481145.10.0PREDICTED: LOW QUALITY PROTEIN: telomere repeat-binding protein 3-like
TrEMBLA0A1S4AX000.0A0A1S4AX00_TOBAC; LOW QUALITY PROTEIN: telomere repeat-binding protein 3-like
STRINGXP_009785792.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-92TRF-like 2