PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016481020.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 249aa MW: 27976.9 Da PI: 8.8963

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016481020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_016481020.1 99 FSCNYCQRKFYSSQALGGHQNAH 121 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.65E-6	96	126	No hit	No description
PROSITE profile	PS50157	11.427	99	126	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	101	121	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MVTLKRDVHL HPKGGQDVLS SSSSSSCQDE RNYRKQEEDH QNATEDIRLR GKSSGDGDGD 60 ESDHRKNPEL NLLERLNTNN SPICNENDPT SDGAEPRVFS CNYCQRKFYS SQALGGHQNA 120 HKRERTLAKR AGQRPIGHHL FNFTPTAAAA AFGHHPYLRV QHQNNYNFVS SMSTLPLNGA 180 NYQNNSLEIQ AHSMIHKATN SSGNWSNRQF IKHQPGVGKL SMIPKGNIHF IPQEENKSDL 240 QKIDLSLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016481020.1	0.0	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A1S4AWM9	0.0	A0A1S4AWM9_TOBAC; zinc finger protein 1-like
STRING	XP_009593661.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15739	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	2e-30	zinc-finger protein 1