PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480271.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20962 Da    PI: 9.9836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.62.1e-151656242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +ien+   qvtfsk rng++KKA+EL v ++aev +i+  +
  XP_016480271.1 16 KIENQNYEQVTFSKCRNGVFKKANELAVVTGAEVGIIMCPQ 56
                    79***********************************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-15766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.502767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-18977IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-11929IPR002100Transcription factor, MADS-box
PfamPF003196.3E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTTRLIKGHK SVRLAKIENQ NYEQVTFSKC RNGVFKKANE LAVVTGAEVG IIMCPQGSKP  60
YSFGHPNVNE TINKYVGEER PPSPSSPGID DKYVQMFRKA NSRELKTRLN SLQDLLDSAL  120
KLKSKLKQMN KNVESQQEWF KGPIEKMNYT EASMLKEGLE DLLLKVKNNG TERYGYENGK  180
WKAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480271.11e-135PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4AUJ81e-134A0A1S4AUJ8_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009769491.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-22AGAMOUS-like 61