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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016480030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 1047aa MW: 116011 Da PI: 6.4677 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.3 | 5.7e-31 | 812 | 867 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY eClkNhAas+Ggha+DGCgEfmps g egt+ alkC AC+CHRnFHR++ + XP_016480030.1 812 SIRYMECLKNHAASMGGHAIDGCGEFMPS-GGEGTPGALKCEACNCHRNFHRKKIIN 867 789*************************9.8899*******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14111 | 5.7E-9 | 15 | 95 | IPR025558 | Domain of unknown function DUF4283 |
Pfam | PF14111 | 1.9E-6 | 310 | 389 | IPR025558 | Domain of unknown function DUF4283 |
Pfam | PF04770 | 1.2E-28 | 813 | 864 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-20 | 814 | 865 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-28 | 814 | 864 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.382 | 815 | 864 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 1047 aa Download sequence Send to blast |
MSRSNLFKMY WDAAAAKCRL TMVGKFFKRK PKMTAIRASF SAKYPLKDHV KIVSFDSLHV 60 FLDFTNEEDY DAIFFKETII VAGAQMEVFR WTPEFHGPFT KMKPDNHTAK VEGRDETLGI 120 MELDKNEHIG GGNEYGSKES EAAPKNTHIL EDGLYISDSV DCVPEATHSD SAERVASPVN 180 CSTATSEIQA SAETSCSGSS GLSFASDGIA GGIPSVMDDS SSMCSTDSMS FRGTYSNHNI 240 QKLYGRGWKY GSKSTSNAAD WASEKLNQPL DALPIGEHHE DRKSRPPIQV QYSTYRGRQA 300 VTFPENYWES LVPDCKLTLI GNFFQRKPRM KEIRADFIAK NPLKGQVKIT HYTSQQVSLD 360 FTNEADYDTV LSKKTLTVAV MQISWWSRDI HHEVGKQEWK AMDKERDVKP GIMEQQKTEL 420 DELIGGETEY KIDAPEAVLE TPDILGEVSD VSNSLHIVPE VAHPDFRDND ASPVNCDTDT 480 SKMHPSIGIT CCQLSGISAP QNMIDGTSPY VMNVNSSKCS TYSILSIVTT GLSSNDKDQS 540 KSIRDVADSA SKAHSQPLDD LPEARQQMLK KDVAVSHQSE LTESDRERHS SEIPSVSSPP 600 RSPPRSIGSV IQLMSKLKVS VTNDPNSVKR STSDNSNLTQ KSVPLFNSAE NAVLLSVDPH 660 KSIEPKAIEK PLVRSISITT ENFPSNQVTA SATAEMPMPL LPTLPLLAHS VSPAAQLCAD 720 PPTAIDTYVP QSYPNGIVGS HIFGRSEQAG SGSIFPSPSQ ALHQHSLAQR HSQLNSYKVD 780 KNAHLDQESN MIAGPTQLQS LLTTSVSDTT SSIRYMECLK NHAASMGGHA IDGCGEFMPS 840 GGEGTPGALK CEACNCHRNF HRKKIINHRQ MAGIGSHIEP RNNSNSRNIH KQSPISQQYQ 900 HNYSYSPSSV VNSSDSYPQL PLPISGQICL PQGLERKEPS LIRPSYSYEM VNHDTVQQWE 960 YFWRDRSRNT SIDHPSLRNE NQNFDMFKPL NYRTSDNIPS EFANEFPHLD IINNLRYDEH 1020 GKGRTLMPNS GFQNLSNGSY HLNGHFT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016480030.1 | 0.0 | PREDICTED: uncharacterized protein LOC107801256 isoform X1 | ||||
TrEMBL | A0A1S4ATY6 | 0.0 | A0A1S4ATY6_TOBAC; uncharacterized protein LOC107801256 isoform X1 | ||||
STRING | XP_009776472.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14101 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 7e-23 | homeobox protein 21 |