PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479810.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 467aa    MW: 51138.2 Da    PI: 8.6222
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-164488147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW+ eE+ ++++a k++G   W++I +++g ++t+ q++s+ qk+
   XP_016479810.1 44 RERWSDEEHRKFIEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 88
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-163892IPR009057Homeodomain-like
PROSITE profilePS5129421.613993IPR017930Myb domain
TIGRFAMsTIGR015573.8E-154291IPR006447Myb domain, plants
SMARTSM007175.9E-134391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-94484IPR009057Homeodomain-like
PfamPF002492.8E-134487IPR001005SANT/Myb domain
CDDcd001675.28E-104689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MTVQDQSKSD TILPSGSRTS LDVGAPADEY APKIRKPYTI SKQRERWSDE EHRKFIEALK  60
LHGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESNNGD VSSVKSIEIP PPRPKRKPMH  120
PYPRKLAIPV KSGTLAPEIS KRSASPNLCL SETENQSPTS VLSARGSDAF GTVDSSKPSE  180
SPSPVSSAVS ENCGDLVLSE QSDFNLEKRR SSPAQAYASS NPDNQACVKL ELFPEDIDFV  240
KEGSVEASST HSLKLFGKTV FVADSCVLSS PTSGQILLAD VNDEPASRTL SQNSFPMKFS  300
PSDSECAPST VTMYHSPAAN GSPRPNKSVS CHLLSWGSSY VSAAFSCTQV HNPIPMKGRA  360
LFDHKDSEDQ EIQKEGSSTG SNTESVSAEL SVDKSLGVEA QISRNQEARR ELFSIRASVP  420
SLFERRANST KRVKGFVPYK RCLAERGISS STLTGEEREE KRTRLCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1034981e-103DQ103498.1 Solanum ochranthum putative At5g37260 (CT251) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479810.10.0PREDICTED: protein REVEILLE 1-like
TrEMBLA0A1S4ATB60.0A0A1S4ATB6_TOBAC; protein REVEILLE 1-like
STRINGXP_009782662.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-55MYB_related family protein