PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479571.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 1020aa    MW: 111860 Da    PI: 4.5582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005187208223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C +C+ +F+ k++L +H+ +H
  XP_016479571.1 187 HCDKCNVTFNGKDDLLQHQLSH 208
                     5******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.89158131IPR001739Methyl-CpG DNA binding
PfamPF014295.1E-566111IPR001739Methyl-CpG DNA binding
SuperFamilySSF541716.54E-866110IPR016177DNA-binding domain
PROSITE profilePS5015710.076186213IPR007087Zinc finger, C2H2
SMARTSM003550.018186208IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.11E-5187252No hitNo description
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SMARTSM003551.1230252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203230257IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1020 aa     Download sequence    Send to blast
MLNKDGEPVD LAVLGTLEDP FGEEMRRRTK GLGSSEELLR FLGRLNGQWG STRKKRRIVD  60
AGEFGNVLPK GWKLLLSIKR KEGRVWLHCR RYISPSGRQF ETCKEVSSYL LFLHGERNEN  120
LPTYAKSCGT AEITNTCALV STSDLQDVSN NEGPLFHNSS PAVDHGELQV LLNFGELSEV  180
QVGDLLHCDK CNVTFNGKDD LLQHQLSHRR RRSRNGQSIT DGVIIKDGKF ECQFCHKTFE  240
ERHRYNGHVG AHVKNQVKTV DGSVSINVGE FVEPVASSGA MLRESIMQDS VVSLRNVTEI  300
ADLSADYGRK FAPSGKIQEE DHMEIDDKLE GLSEALNTAP NKTNMCLSSE AITCNNMGNI  360
YCETPCDSLI ADVVAEGTNK GCHKQEGNSE SCSPISLKEQ TCVNTRKVID SSIIEEPEQE  420
GLLCSTGIVD SCGVSVEDGK FSPAVEESKV EGDRFVDNES STALCSNVSV LDENSLTNAK  480
QVSCTEDHSG KNIDVLNRVP FLAETSKENR GLSSTGTPSC DKEGSAVDYV KRVFHGCIGE  540
QKPSNMMCNI ENDECGSLVD SNDNKLIMKE DSCSFVPHPD KHVNTAEKDV SDGSACFLEE  600
PEQQKGDENG LLSPACDKNG VEAQLLNDSK TTTDEPKVSE LQSVSSNIKG FPCNNHAVQK  660
ADASDIEKEK SLAFCSLFPA TNLRASCAED HDTKVYQSTI EVNDQQRAAN ALFSSTNVPE  720
ASTRENTTNR SYNNPLNGSK FDGLENSRHH DLNVVFGNSH VDLDANLNCT TFQLGMEETY  780
GVQANLLGRF ESDKQGEVGI DLSDSAFKGK TGDLESNFNT VFHSQLWDEQ KVDEVGDSGK  840
KIITGFGCGD AKPNEDVMAG SIWRTGVENV MHGDSADNST SVVQSSNCFQ TYDVLSDKVQ  900
SLFGENEKYD GNTGFDGLRS DRTGPVEYSF MSTQSLNSLQ EEPRALPYDV DIEQGFNTSF  960
WLGKDDVMPN LAGRNQVMLV CVWCRNEFYQ EPNQLGAEAG SIGSMCPTCS GRISGQFSFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778516.10.0PREDICTED: uncharacterized protein LOC104227857
TrEMBLA0A1U7WMK70.0A0A1U7WMK7_NICSY; uncharacterized protein LOC104227857
STRINGXP_009778516.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78501619