PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479504.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 206aa    MW: 23852 Da    PI: 5.2151
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.2e-171770457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    + ++++eq++ Le+ F +++++  e++ +L+++lg++ rq+++W+qNrRa++k+
  XP_016479504.1 17 KKRLNQEQVKLLESSFDSTKKLEPEKKLQLSRELGVPPRQISIWYQNRRARWKN 70
                    56799***********************************************95 PP
2HD-ZIP_I/II103.51.7e-3316107293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+rl++eqvklLE+sF++++kLepe+K +l+reLg+ prq+ +W+qnrRAR+k+++lE dy+aL+ ++++  +e+ +Leke+e+Lr el++
  XP_016479504.1  16 NKKRLNQEQVKLLESSFDSTKKLEPEKKLQLSRELGVPPRQISIWYQNRRARWKNQNLEIDYNALQLKLETALSEKLQLEKETERLRGELQK 107
                     79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6451171IPR001356Homeobox domain
SMARTSM003894.7E-151375IPR001356Homeobox domain
SuperFamilySSF466892.01E-171480IPR009057Homeodomain-like
PfamPF000464.8E-151770IPR001356Homeobox domain
CDDcd000861.46E-131772No hitNo description
Gene3DG3DSA:1.10.10.601.4E-191878IPR009057Homeodomain-like
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNSQNLQKYQ SLPNHNKKRL NQEQVKLLES SFDSTKKLEP EKKLQLSREL GVPPRQISIW  60
YQNRRARWKN QNLEIDYNAL QLKLETALSE KLQLEKETER LRGELQKANQ MLIEINGERA  120
INIPLGDVSL SSYYEEGGSS SFHEDVISYN TTTWEIRKAV TMMKDIAVDL ERDERTEMVK  180
DLEAGVIQLL GASDECMHLS EAIQSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479504.11e-150PREDICTED: homeobox-leucine zipper protein ATHB-52-like, partial
TrEMBLA0A1S4AS461e-148A0A1S4AS46_TOBAC; homeobox-leucine zipper protein ATHB-52-like
STRINGXP_009591846.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.14e-30homeobox protein 52