PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 538aa MW: 58492.5 Da PI: 8.8177

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016479409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_016479409.1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	12.6	0.0004	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_016479409.1 172 WKCEKCSKKYAVQSDWKAHSKTC 194 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	95	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.39E-6	95	118	No hit	No description
SMART	SM00355	0.017	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	96	118	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	137	167	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.8E-4	160	193	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.39E-6	167	192	No hit	No description
SMART	SM00355	140	172	192	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NTTGGIYPPQ YNFAPPNQQI 60 QAQHQIKKKR NQPGNPDPGA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRTSK EIRKKVYVCP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK 180 YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITGNPILPSQ 240 TGSSSHLNLQ FQQSQFNSHE FPAAFSLKKE QQTGFNLRPE IPPWLMTCQP LVGGGGPGPG 300 PPPPQPIDLS SSIFQSTRFE QDYTPNHGQD LNPNPSLNFS STGSLPSPHI SATALLQKAA 360 QMGATMSNKS STVSAAATGP SPTMLMRPHQ FHVSAAAAES VSNNATDFGL NLSSREDLTT 420 GFFNSLASYG NKAATITAAA VATVPVTGPL TSAPSPTSFI MTSFSSANTT GFEGSNFEDE 480 FGGIGILNSK KGNDGNDDMT KDFLGLRPLS HSDIFNIAGL VNTTTIENQS QNHKTWQS

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NTTGGIYPPQ YNFAPPNQQI  60
QAQHQIKKKR NQPGNPDPGA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRTSK EIRKKVYVCP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK  180
YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITGNPILPSQ  240
TGSSSHLNLQ FQQSQFNSHE FPAAFSLKKE QQTGFNLRPE IPPWLMTCQP LVGGGGPGPG  300
PPPPQPIDLS SSIFQSTRFE QDYTPNHGQD LNPNPSLNFS STGSLPSPHI SATALLQKAA  360
QMGATMSNKS STVSAAATGP SPTMLMRPHQ FHVSAAAAES VSNNATDFGL NLSSREDLTT  420
GFFNSLASYG NKAATITAAA VATVPVTGPL TSAPSPTSFI MTSFSSANTT GFEGSNFEDE  480
FGGIGILNSK KGNDGNDDMT KDFLGLRPLS HSDIFNIAGL VNTTTIENQS QNHKTWQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	168	229	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-35	168	229	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	134	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016479409.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Refseq	XP_016479410.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-127	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S4ARV0	0.0	A0A1S4ARV0_TOBAC; protein indeterminate-domain 7-like
STRING	XP_009626387.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-112	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]